Pairwise Alignments

Query, 184 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 55.5 bits (132), Expect = 5e-13
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 30  NYADLHRRLARHLGCGDAASESLHDAWLRLADA-SFTDSVQSPVAYIYRVACNAAMDRLR 88
           N + L +  AR  GC   A + + DA+ RL+ A   T S ++ ++Y++++  N A+D  R
Sbjct: 21  NRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYR 80

Query: 89  AE-RPWQYAGDAEDMLEQVVDHSPGPELIAEARSDLKAVERAMQGLPNRHQDILVALRVH 147
            +    +Y+G  E+ +  VV ++  PE     R+ L  +  A+  LP R +      R++
Sbjct: 81  KQAMELKYSGSEEEGMNVVVQNA-SPEATHINRAALNDIAEALNELPPRTRYAFEMYRLN 139

Query: 148 ELTRHEVAVRHGLSLRRVDTTLRQALL 174
            + + ++A   G+S   V+  +R AL+
Sbjct: 140 GVPQKDIAKELGVSPTLVNFMIRDALV 166