Pairwise Alignments

Query, 178 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 17  YDELKQRLARRLGNSDQASDALQDTWLRLESRDD-IDGVRDPASYLLRVAVNLAYDQLGK 75
           YD+L Q L RR+ +  +A+D  Q+T+L+L + D+    V    S++ RVA NLA D L +
Sbjct: 17  YDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAIDALRR 76

Query: 76  QGRL-ATPEEIDALLEDA-PDPAPGPSQIAEDRSEMAALAALIARMPPRRRQVLVMVRWE 133
           + R+ A+ ++ D   E A P PAP  + +A +R ++   A L  ++P   RQ L++ R E
Sbjct: 77  EQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALL--QLPDNARQALLLNRVE 134

Query: 134 HLPQREVAARLGISLRTVEKELKDAHDFCAARM 166
            L Q++VA RLG+S   V K +  A   C  R+
Sbjct: 135 GLTQKQVAQRLGVSESMVAKYIGQALRHCRGRL 167