Pairwise Alignments

Query, 462 a.a., protease Do from Variovorax sp. SCN45

Subject, 503 a.a., PDZ domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  251 bits (640), Expect = 5e-71
 Identities = 163/452 (36%), Positives = 236/452 (52%), Gaps = 36/452 (7%)

Query: 7   ARLAALVTAAACLAPGLPLHAAMPWPASGLSQLVKAYGPAVVHIGVER------------ 54
           A L  L+ A A +A  +P  +    P  G + L +   PAVV+I   +            
Sbjct: 11  AALRRLIGALAVIALLVPGSSRAGAPPGGFADLAERLLPAVVNISTTQTMKPSQGGPELP 70

Query: 55  ---PSAPARRFSDRWLLRVPGQLPQPQAEGDESSLGTGFIVSDDGLILTNAHVVARGTQI 111
              P +P   F   ++ R  G           +SLG+GFI+   G I+TN HV+A   +I
Sbjct: 71  QFPPGSPLEEFFKEFMERQQGGKSPDAPSRKATSLGSGFIIDAAGYIVTNNHVIADADEI 130

Query: 112 NVKLPDRREFKARLVGLDAVADVALLKIDAAGLPTVRI--GDPSGVEPGDGVVAIGSPYG 169
           +VKL D   F+A LVG D   D+ALLKI+    P V +  G+      GD V+AIG+P+G
Sbjct: 131 SVKLHDDTVFQATLVGRDPKVDLALLKIEPGKKPLVPVPFGNSDDARVGDWVLAIGNPFG 190

Query: 170 FGNSVTAGIVSAKGRLLPGAEYMQFLQTDVPINPGNSGGPLFNLRGEVIGINSRIYSRSG 229
           FG +VTAGIVSA+ R +    Y  FLQTD  IN GNSGGP+FN+RGEVIGINS I S SG
Sbjct: 191 FGGTVTAGIVSARARDINAGPYDDFLQTDAAINRGNSGGPMFNMRGEVIGINSAIISPSG 250

Query: 230 GYQGLSFAIPIDAAMRIKDQLLSTGTVTRGRIGVSVQEVGQALADTFRLPRPAGALVNYV 289
           G  G+ FA+P   A+ + D L   G V RG +G+ +Q +   +A+   LP   GALV  V
Sbjct: 251 GSIGIGFAVPASLAVPVLDDLRKFGKVRRGWLGIRIQSLDTDMAENIGLPDQKGALVAKV 310

Query: 290 EPRGAADRGGLKPGDVILSVQGREVVQAADALGFIAEQAPGENIRLRVWR---------- 339
           +P G   + GLK GDV+L   G+++ +      ++A    G+ + + +WR          
Sbjct: 311 DPNGPGVKAGLKDGDVVLKFDGKDITEMRRLPRYVASTPIGKKVEVVIWRDGKRQTITAS 370

Query: 340 --ERAEQMLEVRVEGF-DTPRLQADAAQAPSAPSRLGFAVRPLAPAERQFLRVDG---GL 393
             E  E   E +V+G  +TP+ QA      + P   G  V    P  R+   +D    G+
Sbjct: 371 VGEMPEDPAEQQVKGKPETPKPQAGKDGILTIPG-AGLTVSSPTPQLRERFGLDDEAKGI 429

Query: 394 LVQRV--NAAASRAGVQPGDLILALNGQPIDS 423
           +V  V  ++ A+  G++PGD+I+  + +P+ S
Sbjct: 430 VVTEVKPDSPAAEKGMRPGDMIIEADHKPVRS 461



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 247 KDQLLSTGTVTRGRIGVSVQEVGQALADTFRLPRPA-GALVNYVEPRGAADRGGLKPGDV 305
           K Q    G +T    G++V      L + F L   A G +V  V+P   A   G++PGD+
Sbjct: 391 KPQAGKDGILTIPGAGLTVSSPTPQLRERFGLDDEAKGIVVTEVKPDSPAAEKGMRPGDM 450

Query: 306 ILSVQGREVVQAADALGFIAE--QAPGENIRLRV 337
           I+    + V   AD    I E  +A  +++ LRV
Sbjct: 451 IIEADHKPVRSPADLGKLIEEGRRAGAKSLLLRV 484



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 392 GLLVQRV--NAAASRAGVQPGDLILALNGQPIDSAEAL 427
           G LV +V  N    +AG++ GD++L  +G+ I     L
Sbjct: 304 GALVAKVDPNGPGVKAGLKDGDVVLKFDGKDITEMRRL 341