Pairwise Alignments

Query, 151 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

Subject, 398 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

 Score = 84.3 bits (207), Expect = 2e-21
 Identities = 46/151 (30%), Positives = 77/151 (50%)

Query: 1   RAMLKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRD 60
           R +L +  +G +L     AR  RTL      GV L++AL        N   +  V    +
Sbjct: 248 RRLLGVRGIGPLLQRVEAARLTRTLGTLLSNGVALLQALVIARQVCTNRALQAQVGSAAE 307

Query: 61  DVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSL 120
            V  G  +  A     L P + +QM  +GE+AG LD+ML+KVA+ ++ E    +D L + 
Sbjct: 308 SVKGGGTLASAFGSQPLLPELALQMIEVGEQAGELDSMLLKVADIFDVEAKRGIDRLLAA 367

Query: 121 LEPLIMIILGVIVGGMVVAMYLPIFKLAATI 151
           L P + +++ V+V  +++A+ LP+  L + I
Sbjct: 368 LVPSLTVVMAVLVAVIMLAIMLPLMSLTSNI 398



 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 13  LHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAM 72
           L  AA+  F + LA    AG PL  +L  +    G       + RIRD V  G  ++ A+
Sbjct: 57  LKGAALVSFTQQLATLLGAGQPLERSLSLLLKQPGQPQVRALIGRIRDHVKAGKPLSAAL 116

Query: 73  KQV-NLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEP--LIMIIL 129
           ++    F  + + M   GE  GAL+  L +++++ E+      + +++L+ P  L++ +L
Sbjct: 117 EEEGGSFSPLYLSMVRAGEAGGALENTLRQLSDYLERSERLRGEVINALIYPAFLVVGVL 176

Query: 130 G--VIVGGMVVAMYLPIFK 146
           G   ++   VV  ++PIF+
Sbjct: 177 GSLALLLAYVVPQFVPIFQ 195