Pairwise Alignments

Query, 329 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 326 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score = 97.4 bits (241), Expect = 4e-25
 Identities = 89/292 (30%), Positives = 126/292 (43%), Gaps = 27/292 (9%)

Query: 15  ARDWLVRLTSGRATTVDAQDFKRWCGRSPLHAQVMAETSRLWD-ATRPAAEAVAQRMRAA 73
           A  W  R+   +    +   FKRW    P H     +   LW  +  PAA    +   A 
Sbjct: 15  ALQWFNRINE-QPGQAEGAAFKRWLLADPAHRAAYDQAQVLWQKSAAPAARLADEEQDAL 73

Query: 74  EASPRAAVAAIAHPGRRYFLGAALAAGAAAFVVVRPPARLWPALSDMTADYSTATGEQRQ 133
           +    A     A  G R   G ALAA     V V         L D+ ADYS+ TG+ RQ
Sbjct: 74  QRYLDAMARPPARGGWRRVAGLALAACLVLAVGVAGGWHPGYWLQDLQADYSS-TGQIRQ 132

Query: 134 VVLADSVVVEMNTQTSFNLARGAEGEPAALDLLAGEAQVLLN--------TARAAPFTLT 185
           V+LAD   V ++            G   A+D   GE +V L         T    PF + 
Sbjct: 133 VILADQSQVTLDA-----------GSAIAVDFAQGERRVRLLHGAAFFEVTHTGEPFLVE 181

Query: 186 AGGGKLVAAAGSRFNVRATGSEVCVTCLAGSVELNYGGRVLVAAE---SQQINYGGRRAE 242
           A GG+ V   G++F VR  G    VT  +G V ++   +  VA E   +QQ+ Y   R  
Sbjct: 182 AAGGE-VRVLGTQFEVREQGEGAQVTVRSGRVGVS-PAQGTVARELTANQQLTYRAGRVG 239

Query: 243 LARKPDLSVVNAWRDRVLVFNDTPLSAVVEEINRYRPGRLIVTNAELGRRKV 294
                D     AWR   L +   PL+ V++++ RY PGR+++ + +LG+RKV
Sbjct: 240 DTLAVDSDNRLAWRQGWLNYYQVPLAQVIDDLGRYYPGRILLLDGDLGQRKV 291