Pairwise Alignments

Query, 329 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 314 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 97/322 (30%), Positives = 143/322 (44%), Gaps = 36/322 (11%)

Query: 6   DDRADLEAQARDWLVRLTSGRATTVDAQDFKRWCGRSPLHAQVMAETSRLWDATRPAAEA 65
           + R  L A AR WL  L SG A+  D Q   +W   S LH     + S L          
Sbjct: 7   ETREALRAAAR-WLALLDSGDASESDLQRLAQWRASSHLHEDAWQKASLL---------- 55

Query: 66  VAQRMRAAEASPRAAVAAIAHP--GRRYFLGAALAAGA---AAFVVVRP-PARLWPALSD 119
              R R A      A+AA+  P  GRR  L  AL   A    A++V R  P   W     
Sbjct: 56  ---RARFAGLPGALAMAALDRPDAGRRALLKQALGVTALLPVAWLVSRELPLDAW----- 107

Query: 120 MTADYSTATGEQRQVVLADSVVVEMNTQTSFNLARGAEGEPAALDLLAGEAQVLLNTARA 179
            TAD  TA GE+RQ +L+D  ++++NT ++ ++  GA      + LL GE  V ++    
Sbjct: 108 -TADMRTAVGERRQALLSDGTLLQLNTDSAVDIELGA----GRVALLRGE--VAVSVPAN 160

Query: 180 APFTLTAGGGKLVAAAGSRFNVRATGSEVCVTCLAGSVELN-YGGRVLVAAESQQINYGG 238
              TL    G++V + G    +R       V+ + G+V L    G  ++  + QQ +   
Sbjct: 161 LSLTLQVPYGRVVLSEGEAC-LRLLDEACRVSAIKGAVSLQPLRGPAVMLQDGQQASLQA 219

Query: 239 RRAELARKPDLSVVNAWRDRVLVFNDTPLSAVVEEINRYRPGRLIVTNAELGRRKVQARL 298
                 +  D   +  WR+  L  +D PL  ++ E+ RYRPG ++    EL R +V    
Sbjct: 220 AGVGPVKAFDAWQL-GWREGALRLDDRPLGELLHELRRYRPG-VLRWAPELERLRVTGTF 277

Query: 299 RLEQLARVETLIGASYGAKVTT 320
           RL+   RV  L+ AS   +V T
Sbjct: 278 RLDDTDRVLALLAASLPLQVQT 299