Pairwise Alignments

Query, 329 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 33/259 (12%)

Query: 66  VAQRMRAAEASPRAAVAAIAHPGRRYFLGAALAAGAAAFVVVRPPARL-WPALSDMTADY 124
           VAQR+  +E+     VA       R+  G    AG AA VV+   A   W     + ADY
Sbjct: 141 VAQRLGVSESM----VAKYIGQALRHCRGRLKQAGVAASVVLLVAAVAGWQQAPILLADY 196

Query: 125 STATGEQRQVVLADSVVVEMNTQTSFNLARGAEGEPAALDLLAGEAQVLLNTAR-AAPFT 183
            TA GE++ + L D   V +N+ ++ ++A         LD  AGEA  L  TA  + PF 
Sbjct: 197 HTAVGERQVITLTDGTRVTLNSASALSVAFSEHERRVVLD--AGEA--LFETADDSRPFV 252

Query: 184 LTAGGGKLVAAAGSRFNVRATGSEVCVTCLAGSVELNYGGRVLVAAESQQINYGGRRAEL 243
           +   G ++   A + F+V+  G                   V++A    ++       EL
Sbjct: 253 VETAGARVQGNAAT-FSVQRDG------------------HVVLARGEAKVG----EHEL 289

Query: 244 ARKPDLSVVNAWRDRVLVFNDTPLSAVVEEINRYRPGRLIVTNAELGRRKVQARLRLEQL 303
           A   D     AW+   L+FN  PL  V+ E+ RYR GR+++++++L   +V     L++ 
Sbjct: 290 AVAADAGTQMAWQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDEP 349

Query: 304 ARVETLIGASYGAKVTTLP 322
             +   +   YG KVT LP
Sbjct: 350 EALLRTLEQRYGLKVTYLP 368