Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 69.3 bits (168), Expect = 3e-17
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 14  LTSRYVDFRNRLRRRFGSDDVADDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAED- 72
           LT R +  R  L+R   +   A+D+L ET+LRV R     P+     ++ + A N+A D 
Sbjct: 11  LTQRVMLLRT-LQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQTARNLALDH 69

Query: 73  ---RRIANGRLLDFVEVEELLHFADDSRDPARVSEARSEVQALERALEELPRRRREIFLA 129
              RRI    L + V ++ L   A     P   ++A   ++AL  +L +L  R++ IF+ 
Sbjct: 70  LRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSARQQRIFIL 129

Query: 130 SRVDETPHKDIALRYGVSVRIVEREVKAALVHCAG 164
           SR+    +++IA + GVS+  V++E+K  +  C G
Sbjct: 130 SRLHGCSYQEIADQLGVSLSTVQKELKLIMAICVG 164