Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 74.7 bits (182), Expect = 8e-19
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 13  LLTSRYVDFRNRLRRRFGSDDVADDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAED 72
           +L + Y +    L  + G+  VA+DV+H+ ++RV   S   P+  P A+L R A N+  D
Sbjct: 1   MLENYYRELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVID 60

Query: 73  RRIANG----RLLDFVEVEELLHFADDSRDPARVSEARSEVQALERALEELPRRRREIFL 128
               N       LD ++ EE   FA  S  P    +    ++ LERAL ELP   R+ FL
Sbjct: 61  GHRRNALRQVEPLDVLDAEE--RFASSS--PHTHHDHGQRLELLERALAELPPACRDSFL 116

Query: 129 ASRVDETPHKDIALRYGVSVRIVEREVKAALVHCAGRL 166
             +++   H  IA R  +S  +VE+ +  A+ HC  R+
Sbjct: 117 LRKLEGLTHLQIAERLSISRAMVEKHIVNAMKHCRVRM 154