Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 22  RNRLRRRFGSDDVADDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAEDRRIANGRLL 81
           R  L RR G  + A D+  ET++R+        +  P AYL  IA ++  D+     R L
Sbjct: 24  RGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQPRAYLSSIARSLMIDQY--RRREL 81

Query: 82  DFVEVEELLHF--ADDSRDPARVSEARSEVQALERALEELPRRRREIFLASRVDETPHKD 139
           +   +E L HF   +   +  R+    S ++ ++R L++L  R RE FL +++D      
Sbjct: 82  ERAYLESLAHFPQVEVPSEETRLLILDS-LERIDRLLDQLKPRVREAFLLAQLDGLTCAQ 140

Query: 140 IALRYGVSVRIVEREVKAALVHC 162
           IALR GVS   VER++  AL  C
Sbjct: 141 IALRLGVSKATVERDLSKALHAC 163