Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 59.3 bits (142), Expect = 4e-14
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 18  YVDFRNRLRRRFGSDDVADDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAED----R 73
           Y D    LR+R  +   A D+  + + +     D   V  P A+L ++A N+  D    +
Sbjct: 18  YTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRKQ 77

Query: 74  RIANGRLLDFVEVEELLHFADDSRDPARVSEARSEVQALERALEELPRRRREIFLASRVD 133
           ++ +    D  +++      D+  DP    +    ++ L+  L EL  RRRE  +  R +
Sbjct: 78  KVRHTVHSDQADMDAE-PATDEQNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLHRFE 136

Query: 134 ETPHKDIALRYGVSVRIVEREVKAALVHCAGRL 166
                 IA R G+S  +VE+ +  AL+HC  RL
Sbjct: 137 GLSQAQIAERMGISTSMVEKHIAFALLHCKRRL 169