Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 54.3 bits (129), Expect = 1e-12
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 1/140 (0%)

Query: 27  RRFGSDDVADDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAEDRRIANGRLLDFVEV 86
           RR G    A D++ + +LR  R      V     YLLR A N+A D   + G      E 
Sbjct: 41  RRVGCRATAADLVQDLFLRFWRRPLV-QVEELSTYLLRCAGNIAIDHLRSEGARARSSEG 99

Query: 87  EELLHFADDSRDPARVSEARSEVQALERALEELPRRRREIFLASRVDETPHKDIALRYGV 146
                  +   +P    EA ++++ +E AL  LP R R+IFL +R+    +  IA   G+
Sbjct: 100 WLPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERTRQIFLLNRIHGRKYAQIAKAMGL 159

Query: 147 SVRIVEREVKAALVHCAGRL 166
           S   VE+ +  AL  C   L
Sbjct: 160 SQSAVEKHMMRALEACKASL 179



 Score = 21.6 bits (44), Expect = 0.009
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 138 KDIALRYGVSVRIVEREVKAALVHCAGRLGRDVIQRFGPGA 178
           +D+ LR+     +   E+   L+ CAG +  D ++  G  A
Sbjct: 54  QDLFLRFWRRPLVQVEELSTYLLRCAGNIAIDHLRSEGARA 94