Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 200 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

 Score = 62.8 bits (151), Expect = 4e-15
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 36  DDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAEDRRIANGRLLDFVEVEELLHF--A 93
           DD++ E++     M     +A P AYL ++A +V   R +   R++    V+ L H    
Sbjct: 38  DDIIQESYSIFAEMERVDTIAYPRAYLFQVARSVVT-RHVRRARIVPIHAVDNLDHLDHP 96

Query: 94  DDSRDPARVSEARSEVQALERALEELPRRRREIFLASRVDETPHKDIALRYGVSVRIVER 153
           DD+  P + +  R E++ L  A+  +P + RE F+  RV+  P + IA + G+S   VE 
Sbjct: 97  DDTASPEQTAIDRDELRQLACAIAAMPLKTREAFILRRVEGLPQRAIAAQMGISENTVET 156

Query: 154 EVKAA---LVHCAGRLGRDVIQ 172
            +      L+   GR G+ + Q
Sbjct: 157 HISRGIRFLIDWFGRGGKTLPQ 178