Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 55.5 bits (132), Expect = 5e-13
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 14  LTSRYVDFRNRL----RRRFGSDDVADDVLHETWLRVNRMSD-PGPVASPMAYLLRIASN 68
           L   +VD R+ L     R  G    A+DV+ + + R++          + ++YL +I  N
Sbjct: 14  LLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRN 73

Query: 69  VAEDRRIANGRLLDFV-EVEELLHFADDSRDPARVSEARSEVQALERALEELPRRRREIF 127
           +A D        L +    EE ++    +  P      R+ +  +  AL ELP R R  F
Sbjct: 74  LAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAF 133

Query: 128 LASRVDETPHKDIALRYGVSVRIVEREVKAALVHC 162
              R++  P KDIA   GVS  +V   ++ ALVHC
Sbjct: 134 EMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHC 168