Pairwise Alignments

Query, 615 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 599 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  150 bits (380), Expect = 1e-40
 Identities = 150/592 (25%), Positives = 253/592 (42%), Gaps = 53/592 (8%)

Query: 34  RAQLLGATALLASSQLIRLALPYLAGQAIN----ALQRGELNGAGRWIAALAGVYVGAWA 89
           R  +  A   L  S    LALP    + I+        G +N     + A+A V   A A
Sbjct: 29  RGLMAAALFALVLSSATTLALPLAVRRIIDHGFQTPDGGMINSYFAMLLAIAVVLALASA 88

Query: 90  LHGPGRILERNVGMRVRETLADQLYARIAAAPLAWHDGHHSGQLQHRVHQASRAL-SDFA 148
           +          +G RV   L   ++A +      + D + SG+L  R+   +  + S F 
Sbjct: 89  MR---YYYVMTIGERVVADLRRDVFAHLTTLSQQFFDSNRSGELTSRLTADTVQIRSAFG 145

Query: 149 QNQFIWLTNAVNFVGPLVALALLSRTSGVTALAGYVLIGLVIVRIDRALMKLARAENDAD 208
            +  + L N +   G +  +   S      AL     I   ++   R++   +R   D  
Sbjct: 146 SSASVALRNIIMCCGAVAMMIYTSPGLSGLALLAIPFIVFPLIAFGRSVRARSRTTQDTL 205

Query: 209 RRYVAALLDFLGNASTVIGLRLQGASRLLLRRRMAAISLPLKRTVVLNEGKWFAVDLMGL 268
               A   + +  + TV     +    +L   R  A      +      G    +  + +
Sbjct: 206 ANSAAYASETIAASRTVQSFNAE----VLANARYGASVEAAYQGARAAIGARSVLTAVAI 261

Query: 269 ALTWGLVVVYVWQARAPGQAVMLGAVFMIYQYAQQAAGVVTSVAANFSFFARMHTDYSSA 328
           AL +G VV  +W      Q V+ G++          AG +      +S  A   +     
Sbjct: 262 ALVFGSVVGILWYG---AQNVLAGSM---------TAGTLGQFVL-YSVIAA--SGLGQL 306

Query: 329 EPIWQ--APSGDVAASVPEQVPEQVPERERIDATAVWSRIDVDGLQWRYAARGEQQTEAA 386
             +W   A +G  A  + E + E+ P  E     A+               RGE + +  
Sbjct: 307 SEVWGELAQAGGAAERLSELLNERSPVAEPAAPVAM-----------PQPPRGEAEFDNV 355

Query: 387 DPVTVRSSG---LHDVKLSLRRGERVALVGPSGGGKSTLLRVLAGLYPPDSGSLSLDG-- 441
           D V   ++G   +  + L +  GE VA+VGPSG GKST+  +L   Y P  G +++DG  
Sbjct: 356 DFVYPLATGRPIVSGLSLKVAAGETVAIVGPSGAGKSTVFSLLMRFYDPQQGRITIDGVD 415

Query: 442 -RPVDWTQLRRLATLIPQETELFEASVRENLAFGQP---RDDAQLLAALHTSTFDEVLKA 497
            R V    LR   +++PQ+  +F +S+ +N+AFG+P   R+D +  AA   +  D  ++ 
Sbjct: 416 IRNVSLADLRARLSIVPQDVAIFASSIHDNIAFGRPEATREDVR--AAAIAAQADGFIER 473

Query: 498 NHGDLDTAVSERGFNLSGGQRQRLCLARGVLAAQGSSLLLLDEPTSALDAGTEARVLERI 557
                DT V ERG  LSGGQRQR+ +AR +L  + + +LLLDE TSALDA +E  V + +
Sbjct: 474 LGDGYDTQVGERGVTLSGGQRQRIAIARAIL--RDAPILLLDEATSALDAESETLVQKAL 531

Query: 558 AGAFPDACVVASIHRLSLLERFDTVVLMEAGHVVDYGPRDAVLGRQPLLQRM 609
                    +   HRL+ + + D +++M+ G +++ G   +++ +  L  R+
Sbjct: 532 DELMKTRTTIVIAHRLATVLKADRILVMDEGRIIEEGTHQSLIRQNGLYARL 583