Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  291 bits (745), Expect = 2e-83
 Identities = 155/287 (54%), Positives = 192/287 (66%), Gaps = 5/287 (1%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATA-----APQGGPRKPRALILAP 55
           Q  AIP  + G DL+  AQTGTGKT  F LP+L RL  A     + + GPR+PR L+L P
Sbjct: 28  QQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHGPRQPRVLVLTP 87

Query: 56  TRELALQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERG 115
           TRELA QV DS + YA+ L L    I+GG GM PQ+ A+ +GVDVLVA PGRL+D   +G
Sbjct: 88  TRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQG 147

Query: 116 SAKLDAVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMR 175
              L  VE+LV+DEADRMLDMGF+  +K++L RLPA RQ LLFSATF   I  LA + + 
Sbjct: 148 KVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLH 207

Query: 176 APQQVQIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAE 235
            P+++++   N   + I  RV+ +    KR LL  ++     +QV+VF RTKHG NRLAE
Sbjct: 208 NPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAE 267

Query: 236 QLEDAGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
            LE  GL + AIHGNKSQ  R KAL DFKAN  RVLVATD+AARGLD
Sbjct: 268 YLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLD 314