Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  265 bits (677), Expect = 1e-75
 Identities = 139/282 (49%), Positives = 189/282 (67%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           QA+AIP  +AG DL+  AQTGTGKTA F LP+L RLA    +      RAL+L PTRELA
Sbjct: 28  QAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSIRALVLVPTRELA 87

Query: 61  LQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKLD 120
            QV +++R YA+ L L  +A+YGG  + PQ+  LRRGVD+LVATPGRL+D   + + K +
Sbjct: 88  EQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFN 147

Query: 121 AVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQV 180
            V+ LV+DEADRMLD+GF   ++ +   LP  RQTLLFSATF  QI+ LA   +  P  +
Sbjct: 148 QVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIRMLAGLALNDPLSI 207

Query: 181 QIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLEDA 240
           +++  N  A ++   + PVD  RK DL   +L  +   QV+VF +T++G ++L E+L   
Sbjct: 208 EVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVFAKTRNGVDQLVERLLAE 267

Query: 241 GLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
           G+ +  IHG++ QA RQ+AL  FKA + +VLVATDVAARGLD
Sbjct: 268 GVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLD 309