Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  238 bits (606), Expect = 3e-67
 Identities = 130/283 (45%), Positives = 183/283 (64%), Gaps = 6/283 (2%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           Q ++IP+ +AGHD++G AQTGTGKTAAF LP+L+++  +      R+P+ALILAPTRELA
Sbjct: 33  QQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK-----REPQALILAPTRELA 87

Query: 61  LQVSDSLRGYAKYLR-LNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKL 119
           LQV+ +   YAK +  +NV A+YGGA MGPQL A+R G  ++VATPGRL DHL R    L
Sbjct: 88  LQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVL 147

Query: 120 DAVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQ 179
             V+ LV+DEAD ML +GF+  ++ I   +PA+RQT+LFSAT  + I+ +A   +R P+ 
Sbjct: 148 STVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFSATLPSSIRSIAERHLREPKH 207

Query: 180 VQIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLED 239
           V+I        AI      V   +K   ++++L     D +I F RTK     LA  LE 
Sbjct: 208 VKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDALIAFVRTKQATLDLAAALEA 267

Query: 240 AGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
            G K+ A++G+ +Q QR++ +   K  +  ++VATDVAARGLD
Sbjct: 268 KGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLD 310