Pairwise Alignments

Query, 342 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score = 96.3 bits (238), Expect = 9e-25
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 51/326 (15%)

Query: 12  DGIVNGAVYGLMALALVLVFSVTRVIFIPQGEFVAFGALSMAALQGGRAPSTLWLLLALA 71
           +G+  G+VYGL+A+   +V+ +  +I    GE     A                    LA
Sbjct: 11  NGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAY-------------------LA 51

Query: 72  AIVLVVEAWRWKRGATVDWRSALTWCVAFPAVAAVLILGFKPTSLAMQSLATLVLIAPLG 131
           AI L + A+                  +FP    +L+LG          L T+V+    G
Sbjct: 52  AISLALLAYFGVE--------------SFP----LLMLG--------TLLFTIVVTGVYG 85

Query: 132 PLLYRVAYRPLADASVLMLLIVSVALHGVLVGLGLFFFGA--EGSRTSAFSEARFDLGG- 188
             + R+AY+PL +++ L  LI ++ +  +L        GA  +G  T      R ++G  
Sbjct: 86  FTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGARQQGVPTLLEGAMRVEVGSG 145

Query: 189 -IPVNGQSLVVVGVTLVLVIAMFWFFGRSMIGKALRATAINRVGARLSGIPTELSGDLSF 247
            + +    + ++    V +  + +    + +G+  RAT  +R  A + GI T+      F
Sbjct: 146 FVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQQDRKMASILGINTDRVISYVF 205

Query: 248 ALAAVIGAISGLLIAP-ITTVYYDTGFLIGLKGFVAAIVGGLASYPLALAGALLVGLLEA 306
            + AV+ A++G+LI     T  +  GF+IG+K F AA++GG+ S P A+ G +++G+ E+
Sbjct: 206 VIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAVLGGIGSLPGAMLGGIILGISES 265

Query: 307 -FSSFWASAYKEVLVFTLIIPVLLWR 331
            FS    S YK+V  F+L++ +L++R
Sbjct: 266 LFSGLINSDYKDVFSFSLLVMILIFR 291