Pairwise Alignments

Query, 386 a.a., Uncharacterized MFS-type transporter from Variovorax sp. SCN45

Subject, 440 a.a., L-arabinose transporter (from data) from Pseudomonas simiae WCS417

 Score =  306 bits (784), Expect = 7e-88
 Identities = 159/379 (41%), Positives = 231/379 (60%), Gaps = 2/379 (0%)

Query: 1   MNKDLGLSATAFGLAVGMFSLGYFFFEIPSMLMLRRVGARRWLARIMISWGVLSLATAFV 60
           M  D+G+   A+GL  G+F +GYF FEIPS LML R GARRW ARIMI+WG +++  AFV
Sbjct: 40  MGADVGIGDAAYGLGAGLFFIGYFLFEIPSNLMLDRFGARRWFARIMITWGAITIGMAFV 99

Query: 61  RTEASLYVVRFLIGAAEAGFVPGVLYYLTRWIPAAQRGRVIGIFMLGVPMATIVGSPISG 120
           +   S YV+RFL+GAAEAGF PGVLYY+T+W P   RG+++G+F+L  P+A ++  P+SG
Sbjct: 100 QGPHSFYVMRFLLGAAEAGFFPGVLYYITQWFPVRHRGKILGLFILSQPIAMMITGPVSG 159

Query: 121 LLLGIN-WFGLQGWQWLFIVEAVPSILLGISILYVLPEKPADVDWLTPGNKAWLQRELDQ 179
            LLG++   GL GWQWLFIV   P+ILL   +L  LP+ P  V W++   KAWL  EL +
Sbjct: 160 GLLGMDGMLGLHGWQWLFIVIGTPAILLTWPVLRYLPDGPKQVTWMSEDEKAWLTGELAK 219

Query: 180 EHARAAALGRSKLMSALTSPIVLVLGLIYLGNGVGLFGAAAFMPLIIRELGLSYAATGWS 239
           +            + AL    VL+L L YL   + ++G   ++P +I++ G S   TG+ 
Sbjct: 220 DLQAYGQTRHGNPLHALKDKRVLLLALFYLPVTLSIYGLGLWLPTLIKQFGGSDLTTGFI 279

Query: 240 MSFVYVLMAVWMIFWTRHSDKTGERIWHVAGASLLGVACLVVAALYAHSPVIAVVWLGLS 299
            +  Y+   + ++   R SD+  +R  H+A   +LG   L  +A +   P++ +  L L+
Sbjct: 280 SAVPYIFGIIGLLIIPRSSDRLNDRYGHLAVLYVLGAIGLFFSA-WLTVPLLQMAALCLA 338

Query: 300 AILMNPATPSFWNLPPKYLSGAGAAAGIALISSIGALGAFIGPLVLGFAKDHFGGYSGGL 359
           A  M   T  FW LP ++ +GA AAAGIALI+S+G LG +IGP V+G  K++ G  + GL
Sbjct: 339 AFAMFSCTAVFWTLPGRFFAGASAAAGIALINSVGNLGGYIGPFVIGALKEYTGNLASGL 398

Query: 360 LLIALGPLLSAVLTLALKR 378
             ++   +   VLT  + R
Sbjct: 399 YFLSGVMVFGLVLTFVVYR 417