Pairwise Alignments

Query, 326 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 298 a.a., D,D-dipeptide ABC transporter permease from Escherichia coli ECRC62

 Score =  170 bits (430), Expect = 5e-47
 Identities = 96/271 (35%), Positives = 160/271 (59%), Gaps = 8/271 (2%)

Query: 60  NPAAVAGVVLLVCMLILALLAPLLYPGDP--LDMVAPPLLWPGQDAAYPLGSDSLGRDVI 117
           +P  V G V++V ML++ + +P L   DP  +D+ A  LL P   AA+  G+D +GRD+ 
Sbjct: 30  SPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTAR-LLPPS--AAHWFGTDEVGRDLF 86

Query: 118 AGIAHGARVSLAVGVVAAVLSLVIGVLVGATAGYFGGRIDDVLVRITELFQTMPSFLFVI 177
           + +  G++ S+  G+V   ++ +IG L+G  +G  GGR D +++RI ++  ++PS +  +
Sbjct: 87  SRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTM 146

Query: 178 VVVAIGQPSVPVIVCAIGLASWPVIARLVRAEFRALRETEFVLAARSQGFSHARIIFQEM 237
            + A   PS+   + AI +   P   RL R +   +R+  +V AA++ G S   +I   +
Sbjct: 147 ALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHI 206

Query: 238 LPNALPPVIVTTSVLVASAILIESALSFLGMG--DPNAVSWGSMIGQGRELLRTAWYLTA 295
           L N+LPP+IV  S+ + SAIL+ + L F+G+G   P+A  WG+M+  GR  +   W+  A
Sbjct: 207 LRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSA-EWGAMVANGRNYVLDQWWYCA 265

Query: 296 LPGAAIVLTVLALNLVGDGLNDAFNPRLRGR 326
            PGAAI+LT +  NL GDG+ D  +P+  G+
Sbjct: 266 FPGAAILLTAVGFNLFGDGIRDLLDPKAGGK 296