Pairwise Alignments

Query, 475 a.a., Type I secretion system, outer membrane component LapE from Variovorax sp. SCN45

Subject, 463 a.a., transporter from Pseudomonas simiae WCS417

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 108/453 (23%), Positives = 199/453 (43%), Gaps = 39/453 (8%)

Query: 6   NHRRLAAACLLAACVPAFAQSSYGDLKLSRRLAPSALAKELGIQPGLALPEAAETTTPLE 65
           +H  L AA  L  CV    Q    +  +S +  P+A   +  +   +   +  +  T   
Sbjct: 3   SHWPLLAAMALGGCVNLAPQYERPEAPVSEQWLPAANLPKGKVGADI---KWQQFFTDRR 59

Query: 66  LTDAVRQAVARHPSISDAIAMLAQQSGGVDVARAGYYPLVRVGMGAGVNGGASATQGG-G 124
           L    + A+A +  +  A   + +      + RA  +P V     AGV+G  S T G   
Sbjct: 60  LAQLQQLALANNRDLRLASLNVEKAQAQYRIKRADLFPTV----DAGVSGTHSRTPGSLS 115

Query: 125 KRGVA------TASVSQMLYD---FGKVSGAVGQS-EAQVQRQQATVLKQIDAIAQQAAE 174
             G A      +A +    Y+   FG+V     ++ E  +   +     QI  +A+ A  
Sbjct: 116 NTGTAVTTHDYSAQLGLSSYELDVFGRVRNLRDEALEDYLALTETRRSTQISLVAEVATA 175

Query: 175 AVVMTHRYQSLVAIAQEQVQAVEKVLETARLRADAGLSTKADPIQAESRVDSARANLLQV 234
            + +    + L+ +AQE + +     +  +     G S+     QA++ V+SAR ++   
Sbjct: 176 WLTLAADNERLL-LAQETLTSQLATYDLTQRSYALGGSSALSVAQAQTTVESARGDVASY 234

Query: 235 KSQLAQWRERLGTLLGRSVPPRMAPLPEHLASELRIDLQ---PDTSLM--PEVLAAEAER 289
           +SQ+ Q R  L  L+G  +P  + P     ++ + +D+    P + L   P+VL+AE   
Sbjct: 235 ESQILQDRNALRLLVGSDLPEALLPGTRLESAAVLVDIPAGLPSSLLQQRPDVLSAEHTL 294

Query: 290 RAATAQLEVAKAQRYPTISLDASVNRPMGGMNSGVPERSGGSHSVMLNLSSVLYQGGALE 349
           ++A   +  A+A  YP+ISL A+       + +G+ +   G+ +   ++S  ++ GG+  
Sbjct: 295 KSANIDIGAARAAFYPSISLTANAGSSSSAL-AGLFKSGSGAWTFAPSISVPIFDGGSNR 353

Query: 350 AQVNTAIAAE----QAARMRIETARLNAGD--QVRNFREQVIGAQARLGVLADRRRSIVE 403
           A +++A        Q  +  ++TA     D   VR+  ++ I AQ     L D  R   E
Sbjct: 354 ATLDSAKVEREIQLQTYQQTLQTAFREVADALAVRSTLDRRIAAQQ---ALTDASRKSFE 410

Query: 404 ARD-LYREQYTLGTRSILDLLNAEQEIHQAAAD 435
             D LYR     G++S L+ L+A++ ++ A  D
Sbjct: 411 LSDALYRG----GSQSYLEALDAQRSLYSAQQD 439



 Score = 43.1 bits (100), Expect = 2e-08
 Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 8/234 (3%)

Query: 20  VPAFAQSSYGDLKLSRRLAPSALAKELGIQPGLALPEAAETTT-PLELTDAVRQAVARHP 78
           V ++      D    R L  S L + L   PG  L  AA     P  L  ++ Q   + P
Sbjct: 231 VASYESQILQDRNALRLLVGSDLPEAL--LPGTRLESAAVLVDIPAGLPSSLLQ---QRP 285

Query: 79  SISDAIAMLAQQSGGVDVARAGYYPLVRVGMGAGVNGGASAT--QGGGKRGVATASVSQM 136
            +  A   L   +  +  ARA +YP + +   AG +  A A   + G        S+S  
Sbjct: 286 DVLSAEHTLKSANIDIGAARAAFYPSISLTANAGSSSSALAGLFKSGSGAWTFAPSISVP 345

Query: 137 LYDFGKVSGAVGQSEAQVQRQQATVLKQIDAIAQQAAEAVVMTHRYQSLVAIAQEQVQAV 196
           ++D G     +  ++ + + Q  T  + +    ++ A+A+ +       +A  Q    A 
Sbjct: 346 IFDGGSNRATLDSAKVEREIQLQTYQQTLQTAFREVADALAVRSTLDRRIAAQQALTDAS 405

Query: 197 EKVLETARLRADAGLSTKADPIQAESRVDSARANLLQVKSQLAQWRERLGTLLG 250
            K  E +      G  +  + + A+  + SA+ +L+ ++      R  L  +LG
Sbjct: 406 RKSFELSDALYRGGSQSYLEALDAQRSLYSAQQDLITLRLTEQSNRITLYKVLG 459