Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  167 bits (422), Expect = 4e-46
 Identities = 99/294 (33%), Positives = 171/294 (58%), Gaps = 15/294 (5%)

Query: 4   FLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVM----LGAMTCVLLLGAGLP 59
           FLQ  + G+++G +YG IA+G+ ++Y    ++NFA GE  M    L A++  LL   G+ 
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIE 64

Query: 60  -YPL----AAFLAVAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIFG 114
            +PL         V  T V G ++  VA +P +N+  +  +I  IG S++++  A+   G
Sbjct: 65  SFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQG 124

Query: 115 TGVASLPAVVPGA-SISIGGAVVQ---PQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIAA 170
                +P ++ GA  + IG   VQ    +  I+VA   G  LL ++ ++ T LG+   A 
Sbjct: 125 AKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYV-IKYTKLGRMCRAT 183

Query: 171 SSDPMAATLMGIRVSNIVRLSFLISASLGAVSGILIA-PIALANYEMGTLLALKGFAAAI 229
             D   A+++GI    ++   F+I A++ A++G+LI       ++  G ++ +K F AA+
Sbjct: 184 QQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTAAV 243

Query: 230 LGGMGSIPGAVLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVG 283
           LGG+GS+PGA+LGG+++G+SE++ +G I+SDYKD  +F ++++ L F P GL+G
Sbjct: 244 LGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLG 297