Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 307 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  174 bits (442), Expect = 2e-48
 Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 16/301 (5%)

Query: 4   FLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVMLGAMTCVLLLGAGLPY--- 60
           F Q  + G+++G  Y  IA+G+ ++Y    ++NFA GE  M+G+    + L AGL     
Sbjct: 7   FFQQLVNGLTIGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIAL-AGLAMMGI 65

Query: 61  ---PL---AAFLA-VAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIF 113
              PL   AAFLA +  T+  G  +  VA RP + +  ++ +I  IG SI ++       
Sbjct: 66  HSLPLLMTAAFLASIVVTSAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNTVLLSQ 125

Query: 114 GTGVASLPAVVPGA-SISIGGA---VVQPQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIA 169
            +   S+P ++PG+ S   GGA   ++    ++V   TL A+L L LF+ ++ LG+   A
Sbjct: 126 DSKDKSIPNLIPGSFSFGPGGAEEVLISYMQILVFVVTLVAMLGLTLFISRSRLGRACRA 185

Query: 170 ASSDPMAATLMGIRVSNIVRLSFLISASLGAVSGILIA-PIALANYEMGTLLALKGFAAA 228
            + D   A L+GI  +NI+ L+F+I A+L AV+ +L++    + N   G L+ LK F AA
Sbjct: 186 CAEDIKMANLLGINTNNIIALTFVIGAALAAVAAVLLSMQYGVINPNAGFLVGLKAFTAA 245

Query: 229 ILGGMGSIPGAVLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVGSGEVT 288
           +LGG+GSIPGA+LGGL++G++EA  A      YKD  AF +++L L F P G++G  EV 
Sbjct: 246 VLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEVE 305

Query: 289 R 289
           +
Sbjct: 306 K 306