Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 293 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  156 bits (395), Expect = 5e-43
 Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 5/293 (1%)

Query: 1   MTEFLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVMLGAMTCVLLLGAGLPY 60
           M  F +  + G+  GV+Y  +A+GF +IY +S V NFAQG  V+  A+T V LL  G+P+
Sbjct: 1   MAFFFEVLIGGLLAGVMYSLVAIGFVLIYKASGVFNFAQGAMVLFAALTFVSLLERGVPF 60

Query: 61  PLAAFLAVAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIFGTGVASL 120
            L+  + +A    + LL+    +RP      I L + T+G + +I G A+ ++G  V  L
Sbjct: 61  WLSFLVTLATMIALALLIERAVLRPLVGRSPITLFMATLGLAYIIEGAAQALWGAQVHGL 120

Query: 121 PAVVPGASISIGGAVVQPQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIAASSDPMAATLM 180
              +  A + +GG ++    L   A     V+LL L   +T +G  L A + DP AA  +
Sbjct: 121 ELAISDAPLELGGLLLSQFDLFAAATAAALVVLLSLLFNRTRIGLALRAVADDPRAAMSV 180

Query: 181 GIRVSNIVRLSFLISASLGAVSGILIAPIALANYEMGTLLALKGFAAAILGGMGSIPGAV 240
           GIR+  +  + + ++  +G V+G+L        + + +L+ LK     I+GG  SI GA+
Sbjct: 181 GIRLPRVWAVVWAVAGFVGLVAGLLWGARLGVQFSL-SLVVLKALPVLIIGGFTSISGAI 239

Query: 241 LGGLLVGLSEAMSAGY----ISSDYKDATAFVVIMLALFFFPNGLVGSGEVTR 289
           +GGL++G SE ++  Y    I    ++   +V+ +L L   P GL G   + R
Sbjct: 240 VGGLIIGASEKLAEVYFGPLIGGGIENWFPYVLALLFLLVRPAGLFGERAIER 292