Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 307 a.a., branched chain amino acid transporter - permease subunit from Pseudomonas putida KT2440

 Score =  174 bits (441), Expect = 2e-48
 Identities = 106/300 (35%), Positives = 171/300 (57%), Gaps = 14/300 (4%)

Query: 4   FLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVMLGAMTCVLLLGA------- 56
           F Q  + G+++G  Y  IA+G+ ++Y    ++NFA GE  M+G+    + L         
Sbjct: 7   FFQQLVNGLTIGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIALAGLAMMGIH 66

Query: 57  GLPYPLA-AFLA-VAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIFG 114
            LP  +  AF+A +  T+  G  +  VA RP +N+  ++ +I  IG SI ++        
Sbjct: 67  SLPILMTVAFVATIFVTSAYGYSIERVAYRPLRNSNRLIPLISAIGMSIFLQNTVLLSQD 126

Query: 115 TGVASLPAVVPGA-SISIGGA---VVQPQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIAA 170
           +   S+P ++PG+ S   GGA   ++    ++V   TL A+ LL LF+ ++ LG+   A 
Sbjct: 127 SKDKSIPNLIPGSFSFGPGGAEEVLISYMQILVFVVTLVAMTLLTLFISRSRLGRACRAC 186

Query: 171 SSDPMAATLMGIRVSNIVRLSFLISASLGAVSGILIA-PIALANYEMGTLLALKGFAAAI 229
           + D   A L+GI  +NI+ L+F+I A+L AV+ +L++    + N   G L+ LK F AA+
Sbjct: 187 AEDIKMANLLGINTNNIIALTFVIGAALAAVAAVLLSMQYGVINPNAGFLVGLKAFTAAV 246

Query: 230 LGGMGSIPGAVLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVGSGEVTR 289
           LGG+GSIPGA+LGGL++G++EA  A      YKD  AF +++L L F P G++G  EV +
Sbjct: 247 LGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEVEK 306