Pairwise Alignments

Query, 418 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 388 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

 Score =  196 bits (497), Expect = 1e-54
 Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 18/380 (4%)

Query: 14  IVAVAGGW-WSMSADKPAAKTAKAPGAGGGAPGASGAPALVTLATAQKQDVPVTVQVNGS 72
           IV VAG   W       AA+ +K        P A   P  V     + +DVPV  +  G+
Sbjct: 11  IVVVAGALAWQQGLIGAAAQASK--------PKAPPPPIPVIATAVKTEDVPVYGEGIGT 62

Query: 73  VVSLNSVDLRPQVTNTVSAVHVKEGQFVKAGQLLFTLDDRNDQANLARAKAQQQKDEATL 132
           V + N++ ++ +V   ++ V  KEGQ VKAG +L  +D R   A LA+AKA + KDEA L
Sbjct: 63  VQASNTITVKVRVDGELTKVVFKEGQEVKAGDILAQIDQRPFAAALAQAKAARAKDEALL 122

Query: 133 ADLERQYKRSQDLVAQNFIAKSAADATLSQLEAQRAAVAADRAAVQSAQVALGYATLRAP 192
           A+ +  Y R + LV +   ++   D   + +   +A ++ D AA+ +AQ+ L Y T+RAP
Sbjct: 123 ANAKADYDRYKVLVPKQAASQQQLDTQSALVAQYQAQISGDEAAIDNAQIQLDYTTIRAP 182

Query: 193 IAGRIGAVNIYPGTLVQPT--LSLVTVTQLDPIAVSFPVPEGNLQDLLEASRSRSKVEAV 250
           I+GR G   +  G +V       LV +TQL P+AV F +P+  L D ++A+ +R  V A+
Sbjct: 183 ISGRTGVRLVDEGNIVHANDGGGLVVITQLKPVAVVFTLPQDRLDD-MQAALARGPVSAL 241

Query: 251 V---TGRKEPLAGTLDFVDNTVDPQIGTVRAKAVFANADQGLWPGQFVGTRITVRTLEGA 307
                G  E   GT+  +DN +    GT+R KAVF N D  LWPG FV  ++ + T    
Sbjct: 242 AFRRDGVTEVGEGTVALIDNQISSDTGTLRIKAVFPNDDLKLWPGAFVNVKVLLDTHHNV 301

Query: 308 TVVPAAALMMLSDGPSLYVVDEGKTATRRKVKALH-TFGTKVAVSGVEPGEQVVIEGSQN 366
             +PA A+    DG  +YVV    T  +R V     + G     +G+  G+QVVI+G   
Sbjct: 302 ITIPAQAIQRGPDGFYVYVVKPDATVEKRAVTTSGISAGIASIATGLVAGDQVVIDGQYK 361

Query: 367 VRPGGKVRVDAKAPAAAPGA 386
           + PG +V V  + P A P A
Sbjct: 362 LIPGARVTV--RPPPATPPA 379