Pairwise Alignments

Query, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  256 bits (654), Expect = 3e-72
 Identities = 215/643 (33%), Positives = 314/643 (48%), Gaps = 50/643 (7%)

Query: 16  QAERLAAALASLNEAQRAAVEHGVGAAVGAGAQADQRPLLVIAGAGSGKTSTLAHRVAHL 75
           + + L+  L SLN+AQR AV   +G              LV+AGAGSGKT  L HR+A L
Sbjct: 2   RTDDLSLLLNSLNDAQRQAVAATLGRQ------------LVLAGAGSGKTRVLVHRIAWL 49

Query: 76  I-AGGVDPQRLLLLTFSRRAAQEMGRRAGQVLTKVLGLKSEAPPSLPWAGTFHGIGARLL 134
           I      P  +L +TF+ +AA EM +R  Q+L    G+     P+  W GTFHG+  RLL
Sbjct: 50  IQVEQASPHSILSVTFTNKAAAEMRQRIEQLL----GIN----PAGMWVGTFHGLAHRLL 101

Query: 135 REYAAQIGLDENFTIHDRGDAEDLMGLARHELGLSSTVNRFPRKGTCLSIYSRCVNTRAP 194
           R +  +  L +NF I D  D + L+     ELGL     ++P +     I  +       
Sbjct: 102 RAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDE--QKWPARQAQWFINGQ------- 152

Query: 195 LAEVLRESFPWCGE--WEAELKTLFGAYVEAKHRQNVLDYDDLLLYWAGMVAE-PELAAH 251
             E LR      G   + A ++ ++ AY +A  R  V+D+ +LLL    +  + P L  H
Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEH 212

Query: 252 VGARFDHVLVDEYQDTNLLQASILLALKPDGRGVTVVGDDAQSIYSFRGATVRNILDFPS 311
              RF HVLVDE+QDTN +Q + L  L   G  +  VGDD QSIY +RGA + NI  + +
Sbjct: 213 YQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLMAVGDDDQSIYGWRGAKIENIHQYTA 272

Query: 312 QFTQDARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPL-LVLVPDEA 370
            F  DA ++ LE+NYRST  IL  +N +IA  + R  K LWTD    G+PL L    +E 
Sbjct: 273 DFP-DAEMIRLEQNYRSTGGILKAANALIANNSGRLGKELWTDM-GEGEPLTLYAAYNEH 330

Query: 371 GQARWVADKVLAHREGGLALKSQAVLFRTSTHSAALELELARRNIPFVKFGGLKFLEASH 430
            +AR+V + + +  + G A    A+L+R++  S  LE  L R  IP+  +GG +F E + 
Sbjct: 331 DEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAE 390

Query: 431 VKDLLAVLRFAQNPRGRMAGFRVTQLIP-GIGPVTGTRLLD-AMDQAADPVAAVRDFVPP 488
           +K+ +A LR  +      A  RV  + P GIG  T   + + A         A+   +  
Sbjct: 391 IKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAA 450

Query: 489 SAARAQWAD----FATAYEALRSPALEWPADVEVAMAWYQPHLERLYEDTSGVR-RADVE 543
            A + + A     F    E L +  ++ P          Q  L   +++  G + +A VE
Sbjct: 451 KALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEEKGEKGQARVE 510

Query: 544 QLARLAAGYGSRERFLTELTLDPPEA----TSDRPGPPLLD--EDYLILSTIHSAKGQEW 597
            L  L +   + E    +  L P  A     S   G    D  ED + L T+HSAKG E+
Sbjct: 511 NLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLHSAKGLEF 570

Query: 598 NSVHVLNVVDGCLPADVA-QSAHELEEERRLLYVAMTRARDHL 639
             V ++ + +G  P  ++ +    LEEERRL YV +TRA   L
Sbjct: 571 PYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRQL 613