Pairwise Alignments

Query, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  180 bits (457), Expect = 2e-49
 Identities = 174/629 (27%), Positives = 272/629 (43%), Gaps = 80/629 (12%)

Query: 53  PLLVIAGAGSGKTSTLAHRVAHLIAG-GVDPQRLLLLTFSRRAAQEMGRRAGQVLTKVLG 111
           PLLV+AGAGSGKTS +  ++AHLI   G+  Q ++ +TF+ +AA+EM  R   +L    G
Sbjct: 18  PLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVATLLRPGEG 77

Query: 112 LKSEAPPSLPWAGTFHGIGARLLREYAAQIGLDENFTIHDRGDAEDLMG-LARHELGLSS 170
                        TFH +G  ++R+   ++G    F+I D  D + L+  + + E     
Sbjct: 78  RGLTVC-------TFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQKEYSGDD 130

Query: 171 TVNRFPRKGTCLSIYSRCVNTRAPLAEVLRESFPWCGEWEAELKTLFGAYVEAKHRQNVL 230
            ++         ++     N      E L ++       E     ++  Y       N +
Sbjct: 131 GIDEIK------NMIGAWKNDLVLPPEALEKAR---NPREQTAAIVYTHYQRTLKAFNAV 181

Query: 231 DYDDLLLYWAGMVAE-PELAAHVGARFDHVLVDEYQDTNLLQASILLALKPDGRGVTVVG 289
           D+DDL+L    +  E PE+      R  ++LVDEYQDTN  Q  ++  L       TVVG
Sbjct: 182 DFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMRNQFTVVG 241

Query: 290 DDAQSIYSFRGATVRNIL----DFPSQFTQDARVVTLERNYRSTQPILDVSNRVIAQAAE 345
           DD QSIY++RGA   N++    D+PS      ++V LE+NYRST  IL  +N +IA    
Sbjct: 242 DDDQSIYAWRGARPENLMLLKEDYPS-----LKIVMLEQNYRSTSRILRCANVLIANNPH 296

Query: 346 RHAKTLWTDKPSAGKPLLVLVPDEAGQARWVADKVLA-HREGGLALKSQAVLFRTSTHSA 404
              K LW++     +  ++   +E  +A  VA ++L  H          A+L+R +  + 
Sbjct: 297 AFEKQLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRTNRPYSDFAILYRGNYQAK 356

Query: 405 ALELELARRNIPFVKFGGLKFLEASHVKDLLAVLRFAQNPRGRMAGFRVTQLIP--GIGP 462
            +EL+L    +P+   GG  F     VKDL+A LR   NP    A  RV   +P   IG 
Sbjct: 357 LIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVIN-VPRREIGS 415

Query: 463 VTGTRLLD-------AMDQAADPVAAVRDFVPPSAARAQ----WADFATAYEALRSP--- 508
            T  +L +       +M  A++ +            R Q    W D      AL  P   
Sbjct: 416 TTLEKLGNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIAA 475

Query: 509 ------------------ALEWPADVEVAMAWYQPHLERLYEDTSGVRRADVEQLARLAA 550
                             A +  A+  ++  W+      L E        D E    +  
Sbjct: 476 LHEMIRDIDYENWIRQQTASDKAAEFRISNVWF------LVEALKNTLEKDEEGDMTIED 529

Query: 551 GYGSRERFLTELTLDPPEATSDRPGPPLLDEDYLILSTIHSAKGQEWNSVHVLNVVDGCL 610
             G  +  L ++     E   +  G  ++        T+H++KG E+  V ++ + +  L
Sbjct: 530 AIG--KLVLRDMLERQQEEEENAEGVQMM--------TLHASKGLEFPYVFIMGMEEEIL 579

Query: 611 PADVAQSAHELEEERRLLYVAMTRARDHL 639
           P   +  A  +EEERRL YV +TRAR  L
Sbjct: 580 PHRSSIEADTIEEERRLAYVGITRARQTL 608