Pairwise Alignments

Query, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  535 bits (1378), Expect = e-156
 Identities = 269/530 (50%), Positives = 355/530 (66%), Gaps = 8/530 (1%)

Query: 17  LAPTAIAALTLACG--AVSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQ-VYNTIVEFE 73
           L P  +AA  LAC   A +A TLVYCSE SP  F P   T+GT FD + + V+N + +F+
Sbjct: 6   LKPLLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFK 65

Query: 74  RGGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWK 133
           RGGT+V PGLA  WDIS DG  YTFHLR GVK+HTT   F PTRDFNADD +F   R   
Sbjct: 66  RGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTD-FFSPTRDFNADDVLFTFNRLLD 124

Query: 134 ESDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQS 193
              PF +       YF DMG+   +K+VD++DD+TV+  LN  +A F+ NLAM +A +QS
Sbjct: 125 AQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQS 184

Query: 194 KEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGK-AKIDDLVFAI 252
            EYA  +LK G  E+++Q P+GTGPF   +YQKD+ IR+ A  QYW  +  K+D+LVFAI
Sbjct: 185 AEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVFAI 244

Query: 253 TPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPFDD 312
           TPDA+ R  KL+ GEC V  YP PAD++ +++DPN+ VL+Q G N+G+L+YN T  P D 
Sbjct: 245 TPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVTHPPLDQ 304

Query: 313 VRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLAQA 372
           ++VR+A++MAI+K AII  VY + G  A+N +PP  WSY+  +KD PYDP  AK LL +A
Sbjct: 305 LKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKDAPYDPTKAKALLKEA 364

Query: 373 GYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGEH 432
           G   G + +LWAM VQR  NPNA+  A+++Q D  K+ +KA I S+EWGEY KR + GEH
Sbjct: 365 GVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKNGEH 424

Query: 433 QMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQADRD 492
              + GWTGDNGDPDN+L  L  CA+ K   GSN +K+C   Y+ LV +AK +  +  R 
Sbjct: 425 DAMIYGWTGDNGDPDNWLGVLYSCAAVK---GSNYAKWCNPAYDKLVQQAKVSNDREQRI 481

Query: 493 ALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDI 542
             Y++AQ I KEQ P   IA++   +P+RKEV DFK+SPFG   FYGV +
Sbjct: 482 KWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFKISPFGLTPFYGVSL 531