Pairwise Alignments

Query, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  553 bits (1425), Expect = e-162
 Identities = 274/528 (51%), Positives = 365/528 (69%), Gaps = 14/528 (2%)

Query: 25  LTLACGAVSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQ-VYNTIVEFERGGTKVVPGL 83
           L+ A  AV+A  LV+CSEGSP  F PG  TTGT FD + + V+N + +FERGGT V+PGL
Sbjct: 16  LSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFERGGTAVIPGL 75

Query: 84  AEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKESDPFFKVTS 143
           A KW++S DG  YTFHLR+GVK+HTT   FKP+R FNADD +F   R   + +PF K   
Sbjct: 76  ATKWEVSDDGKTYTFHLREGVKFHTTDY-FKPSRPFNADDVLFTFNRMLDKDNPFRKAYP 134

Query: 144 QNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQSKEYAIAMLKA 203
               YF DMGM K +  V+++D++TVK  LN+ +A F+ NLAM +A IQS EYA  +LK 
Sbjct: 135 TEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAEYADQLLKN 194

Query: 204 GTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGK-AKIDDLVFAITPDASVRWAK 262
           G    ++Q PIGTGPF   +YQKDA IRFK    YW  +  KID+L+FAIT DASVR  K
Sbjct: 195 GKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASVRMQK 254

Query: 263 LQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKK--------PFDDVR 314
           L+K EC V  +P PAD++ ++ D N+Q+ +Q G N+GY++YN   K        P   ++
Sbjct: 255 LKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQLK 314

Query: 315 VRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLAQAGY 374
           VR+A++MA++KK II+ VY   G  A N +PPT WSY+D++KD  +DPE AK+LL +AG 
Sbjct: 315 VRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDAAFDPEKAKQLLKEAGI 374

Query: 375 PDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGEHQM 434
            +G    LWAMPVQRPYNPNAK +AE++Q+D AKI +KA+I S+EWGEY KR + GE   
Sbjct: 375 KEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSKGGEQGA 434

Query: 435 GMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQADRDAL 494
            ++GW+GDNGDPDN+L TL GC    +  G+N SK+CY+PY+DL+ +AK+T  QA R  L
Sbjct: 435 MLIGWSGDNGDPDNWLGTLYGC---DAVDGNNFSKWCYKPYDDLIKQAKATSDQAKRTEL 491

Query: 495 YKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDI 542
           Y+KAQ I KEQ P   IAH+   +P+  +V DFK+SPF  ++FYGV +
Sbjct: 492 YQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSFYGVSV 539