Pairwise Alignments

Query, 301 a.a., Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 303 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  239 bits (610), Expect = 6e-68
 Identities = 120/282 (42%), Positives = 180/282 (63%), Gaps = 5/282 (1%)

Query: 19  PLREFWAAFSANRGAVIGLVTIILLMLVAMFAPWIAPHAPNETNSAVFLQPPAWQQGGST 78
           P  EFW  F     A+   + +ILL++VA+FA WIAP+     ++  +        G S 
Sbjct: 26  PWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPY-----DAENYFDYDNLNNGPSL 80

Query: 79  SYLLGTDAIGRDILSRLMYGARLSLSIGVAVVALSVVVGVVLGLIAGFFRGVLEIAIMRL 138
            +  G D++GRDI SR++ GA++SL+ GV  V +   +G +LGL+AG++ G  +  IMR+
Sbjct: 81  QHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRI 140

Query: 139 MDIVLTLPSLLLAIVIVAILGPGLVNAMLAVAIVVLPHYVRITRAAVIAEVSRDYVTAAR 198
            D++   P +LLAI +VA+LG G+ N ++AVAI  +P + R+ R   +    + ++ +AR
Sbjct: 141 CDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200

Query: 199 VSGAGTLRLMFREVLPNCAAPLIVQASLGISTAILDAAALGFLGLGAQPPSPEWGTMLAD 258
             GA  + ++ R +LP   + ++V  ++ I T+I+ AA+L FLGLGAQPP+PEWG ML +
Sbjct: 201 SIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNE 260

Query: 259 AREFVLRAWWVVTFPGLAILMAVLAFNLLGDGLRDALDPKLK 300
           AR  ++ A  V  FP LAI + VLAFNLLGDGLRDALDPK+K
Sbjct: 261 ARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302