Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  156 bits (394), Expect = 2e-43
 Identities = 79/159 (49%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 6   AAANGAMHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYL 65
           +A    +   Y  HH WL+ WLRRRLGC HSAADLAQDT++R LL+ +  P L EPRA+L
Sbjct: 9   SALTSTVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMR-LLQAREAPQLVEPRAFL 67

Query: 66  STLAKGVVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMSPKA 125
           +T+AK V+  H+RRQ LERAYL+ LA +PE +A   E++  + +TL  +D +LDG+ P  
Sbjct: 68  ATVAKRVLCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLV 127

Query: 126 REAFVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERC 164
           + AF+L+Q++GL    IA  L IS  TVKRY+ +   RC
Sbjct: 128 KRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166