Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  169 bits (428), Expect = 2e-47
 Identities = 85/165 (51%), Positives = 112/165 (67%)

Query: 1   MTSAHAAANGAMHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLRE 60
           M  A       +   Y EH GWL AWLRRR+G +  AADL+QDTF+R+L   Q L  +RE
Sbjct: 1   MIDAAPPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIRE 60

Query: 61  PRAYLSTLAKGVVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDG 120
           PRAYL T+ K ++S   +R++LE+AYL+ LA LPE    SPE+R  LL+TL  +D +LDG
Sbjct: 61  PRAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDG 120

Query: 121 MSPKAREAFVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERCL 165
           + P  R+AF+ SQLEGL YA I +RL + +R+VKRYM Q +E CL
Sbjct: 121 LKPAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCL 165