Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  167 bits (422), Expect = 1e-46
 Identities = 89/167 (53%), Positives = 113/167 (67%)

Query: 1   MTSAHAAANGAMHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLRE 60
           M  A  + N  + T YTEHHGWL  WL R+LG +  AADLA DTFVR+L R        E
Sbjct: 1   MPPAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNE 60

Query: 61  PRAYLSTLAKGVVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDG 120
           PRA L+ +AKG+V + WRRQ +ERAYLE +A LP+P   SPE R  +L+TL  IDAML  
Sbjct: 61  PRALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRD 120

Query: 121 MSPKAREAFVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERCLAL 167
           M  + R+ F+LSQL+GLTYA IAE+LQ+S  T+KR M+  F  CL++
Sbjct: 121 MPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSI 167