Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  149 bits (377), Expect = 2e-41
 Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 1/152 (0%)

Query: 16  YTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYLSTLAKGVVSE 75
           Y  HH WL  WLR R+GCS  AADLAQDTFVR+L   Q+ P L+EPRAYLS++A+G++ +
Sbjct: 16  YQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSP-LKEPRAYLSSIARGLMID 74

Query: 76  HWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMSPKAREAFVLSQLE 135
            +RR+ALERAY E LA LPE    S E++L +L +L+ +D  L  + P+ R+AF+L+QL+
Sbjct: 75  QFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQLD 134

Query: 136 GLTYAAIAERLQISERTVKRYMQQGFERCLAL 167
           GL+   +A+RL +S  TV+R + +    C  L
Sbjct: 135 GLSIVQVAQRLGVSRATVERDLAKALGACYRL 166