Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  149 bits (375), Expect = 3e-41
 Identities = 81/162 (50%), Positives = 111/162 (68%), Gaps = 4/162 (2%)

Query: 3   SAHAAANGAMHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPR 62
           S HA   GA+   Y +H GWL AWL+R + C   A DL+QDTFVR+L R Q L T REPR
Sbjct: 6   SPHADLVGAL---YRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQ-LDTPREPR 61

Query: 63  AYLSTLAKGVVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMS 122
           A+L+ +AKG++ +H+RR ALE+AYL  LAL+PE    SPE +  +L+ L  ID +L  +S
Sbjct: 62  AFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLS 121

Query: 123 PKAREAFVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERC 164
            KAR AF+ S+L+G+ +A IAERL +S   V++Y+ QG  +C
Sbjct: 122 SKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163