Pairwise Alignments

Query, 804 a.a., DNA polymerase II (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 785 a.a., DNA polymerase II from Pseudomonas simiae WCS417

 Score =  893 bits (2308), Expect = 0.0
 Identities = 436/784 (55%), Positives = 571/784 (72%), Gaps = 3/784 (0%)

Query: 21  QGFILTRHWRDASSGTEIEYWLATDEGPRKAVLRSQTSVAFVESRHRPALEAQLAAMPGM 80
           QGF+LTRHWRD  +GTE+ +WLATD+GPR   L  QTSV F+   HR  L+  L     +
Sbjct: 5   QGFVLTRHWRDTPAGTEVSFWLATDQGPRFIRLPVQTSVMFIPEAHRKPLDWLLKGERDI 64

Query: 81  QVRELELKTFNCQPVVGVYAKHYRQLGRLTRALQPQGVPVLEADVRPHDRYLMERFITAG 140
           ++R L+L  F+ +PV+G+Y + +RQ   + + L+  GV V E DVRP +RY+MERFITA 
Sbjct: 65  ELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMMERFITAP 124

Query: 141 VTVEEGRADGATIVDCRLKPAPEFRPVLKMVSLDIETSQDEALYSIALDGLQDRVVFMLG 200
           V           + D ++KPAP++RP LK+VSLDIET+    LYSIAL+G  +R V+MLG
Sbjct: 125 VWFGGTPDATGVLCDAQMKPAPDYRPPLKLVSLDIETTAQGDLYSIALEGCGERQVYMLG 184

Query: 201 EAPPGPGEPMDFSLVYCPTRKAMVESLNDWFERNDPDVVIGWNVIQFDLRVLQKTANDCG 260
             PP     +DF L YC TR  ++E LN W   +DPD +IGWNV+QFDLRVL + A    
Sbjct: 185 --PPNKPAAVDFKLDYCDTRAQLLERLNQWLALHDPDAIIGWNVVQFDLRVLHEHAQRLN 242

Query: 261 MQLLLGRERRPIEWRTHPGKQGYLFAPTPGRVIIDGIDALKAAMWSFPSFSLETVSQALL 320
           + L+LGR   P+ WR H G + + FA   GR+IIDGI+AL++A WSF SFSLE V+Q LL
Sbjct: 243 VPLMLGRGEEPMAWREH-GSRNHYFAAAAGRLIIDGIEALRSATWSFESFSLENVAQTLL 301

Query: 321 GEGKAIGDEYDKMAEIERRYQEDKPALALYNIRDCELVLRIFDKAKLLQFVMERAQTTGL 380
           GEGK I   Y +M EI R + EDKPALA YN++DCELV RIF+K +LL+F++ERA  TGL
Sbjct: 302 GEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERASVTGL 361

Query: 381 QADHFGGSIAAFSHHYLPRMHRLGYVAPNVGEIASKAFPGGYVMDSKPGFYDSVVVLDYK 440
            AD  GGS+AAF+H Y+P MHR G+VAPN+G+   +A PGG+VMDS+PG Y+SV+VLDYK
Sbjct: 362 PADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGLYESVLVLDYK 421

Query: 441 SLYPSIIRTFLVDPVGLVEGTHAGDPAMVVKGPQGTVFSRERHCLPEIVTTLWRARDEAK 500
           SLYPSIIR+FL+DPVGL+EG    D +  V+G +G  FSR RHCLP IV  +   R+ AK
Sbjct: 422 SLYPSIIRSFLIDPVGLIEGLKHPDDSESVEGFRGARFSRTRHCLPSIVARVSEGREVAK 481

Query: 501 RVGNEPLSQALKLLMNSFAGVLGAADCRFFNPKLVSAVTLRGHEMMKLTREFVQSRGYEV 560
           R  N PLSQALK++MN+F GVLG++ CRFF+ +L S++T+RGH++M+ TRE V+++GYEV
Sbjct: 482 REHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTRELVEAQGYEV 541

Query: 561 IYGDTDSIFVWLKRTHTNEEAHAVAANLVRDINDWWTGSLRDEQGLDNFLEIEFDTHYRK 620
           IYGDTDS FVWL   H  E+A  +   LV+ +NDWW   L+   GL + LE++++TH+ +
Sbjct: 542 IYGDTDSTFVWLGSAHGQEDAGRIGRALVQHVNDWWREHLQTAFGLQSALELQYETHFTR 601

Query: 621 FFMPTIRGSDVGSKKRYAGLSVDAKGKEEMVYRGLEMARSDWTPLARQFQEGLLSRIFQG 680
           F MPTIRG++ GSKKRYAGL V + G+EEMVY+GLE  RSDW+PLAR+FQ+ L  RIF  
Sbjct: 602 FLMPTIRGAEEGSKKRYAGLVVHSDGREEMVYKGLETVRSDWSPLARRFQQELYQRIFHR 661

Query: 681 EPYKEFVSDYAQSTLAGEKDDLLIYRKRLRHRLDAYLVNVPPQVRAARIADEYNARIGRP 740
           +P+++++ DY + TL+GE D+LLIYRKRLR +LD Y  NVPP VRAAR+ADEYN R+ RP
Sbjct: 662 QPHQDYIRDYVRLTLSGEFDELLIYRKRLRRQLDDYERNVPPHVRAARLADEYNDRMNRP 721

Query: 741 MQYQSGGWIRYVMTRNGPEPLETRHSRIDYEHYLSKQLQPIADAILQPVGESFTALTTAQ 800
            QYQ GGWI YV++ NGPEPLE RH+ IDY+HY+++QLQP+ADAIL  V + F+ L   Q
Sbjct: 722 RQYQRGGWISYVISVNGPEPLEVRHAPIDYDHYVTRQLQPVADAILPFVNDDFSTLVGGQ 781

Query: 801 QHLF 804
             LF
Sbjct: 782 MGLF 785