Pairwise Alignments

Query, 804 a.a., DNA polymerase II (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 783 a.a., DNA polymerase II from Escherichia coli BL21

 Score =  887 bits (2291), Expect = 0.0
 Identities = 439/783 (56%), Positives = 564/783 (72%), Gaps = 4/783 (0%)

Query: 22  GFILTRHWRDASSGTEIEYWLATDEGPRKAVLRSQTSVAFVESRHRPALEAQLAAMPGMQ 81
           GFILTRHWRD   GTE+ +WLATD GP +  L  Q SVAF+ +   P  +  L    G++
Sbjct: 5   GFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGVR 64

Query: 82  VRELELKTFNCQPVVGVYAKHYRQLGRLTRALQPQGVPVLEADVRPHDRYLMERFITAGV 141
           +  L LK F+ QPV G+Y + +RQL    + L+  GV V EADVRP +RYLMERFIT+ V
Sbjct: 65  LTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPV 124

Query: 142 TVEEGRADGATIVDCRLKPAPEFRPVLKMVSLDIETSQDEALYSIALDGLQDRVVFMLGE 201
            VE    +GA IV+ RLKP P++RP LK VS+DIET++   LY I L+G   R+V+MLG 
Sbjct: 125 WVEGDMHNGA-IVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGP 183

Query: 202 APPGPGEPMDFSLVYCPTRKAMVESLNDWFERNDPDVVIGWNVIQFDLRVLQKTANDCGM 261
              G    +DF L Y  +R  ++E LN WF   DPDV+IGWNV+QFDLR+LQK A    +
Sbjct: 184 EN-GDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRI 242

Query: 262 QLLLGRERRPIEWRTHPGKQGYLFAPTPGRVIIDGIDALKAAMWSFPSFSLETVSQALLG 321
            L LGR+   +EWR H  K G  FA   GR+IIDGI+ALK+A W+F SFSLETV+Q LLG
Sbjct: 243 PLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLG 302

Query: 322 EGKAIGDEYDKMAEIERRYQEDKPALALYNIRDCELVLRIFDKAKLLQFVMERAQTTGLQ 381
           EGK+I + +D+M EI+RR+ EDKPALA YN++DCELV +IF K +++ F++ERA   GL 
Sbjct: 303 EGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLP 362

Query: 382 ADHFGGSIAAFSHHYLPRMHRLGYVAPNVGEIASKAFPGGYVMDSKPGFYDSVVVLDYKS 441
            D  GGS+AAF H Y PRMHR GYVAPN+GE+   A PGGYVMDS+PG YDSV+VLDYKS
Sbjct: 363 VDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKS 422

Query: 442 LYPSIIRTFLVDPVGLVEGTHAGDPAMVVKGPQGTVFSRERHCLPEIVTTLWRARDEAKR 501
           LYPSIIRTFL+DPVGLVEG    DP    +G     FSRE+HCLPEIVT +W  RDEAKR
Sbjct: 423 LYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKR 482

Query: 502 VGNEPLSQALKLLMNSFAGVLGAADCRFFNPKLVSAVTLRGHEMMKLTREFVQSRGYEVI 561
            GN+PLSQALK++MN+F GVLG   CRFF+P+L S++T+RGH++M+ T+  ++++GY+VI
Sbjct: 483 QGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVI 542

Query: 562 YGDTDSIFVWLKRTHTNEEAHAVAANLVRDINDWWTGSLRDEQGLDNFLEIEFDTHYRKF 621
           YGDTDS FVWLK  H+ EEA  +   LV+ +N WW  +L+ +Q L + LE+E++TH+ +F
Sbjct: 543 YGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQ-KQRLTSALELEYETHFCRF 601

Query: 622 FMPTIRGSDVGSKKRYAGLSVDAKGKEEMVYRGLEMARSDWTPLARQFQEGLLSRIFQGE 681
            MPTIRG+D GSKKRYAGL +    K+ MV++GLE  R+DWTPLA+QFQ+ L  RIF+ E
Sbjct: 602 LMPTIRGADTGSKKRYAGL-IQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE 660

Query: 682 PYKEFVSDYAQSTLAGEKDDLLIYRKRLRHRLDAYLVNVPPQVRAARIADEYNARIGRPM 741
           PY+E+V +     +AGE D  L+YRKRLR  L  Y  NVPP VRAAR+ADE N + GRP+
Sbjct: 661 PYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL 720

Query: 742 QYQSGGWIRYVMTRNGPEPLETRHSRIDYEHYLSKQLQPIADAILQPVGESFTALTTAQQ 801
           QYQ+ G I+YV T NGPEPL+ + S +DYEHYL++QLQP+A+ IL  + ++F  L T Q 
Sbjct: 721 QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL 780

Query: 802 HLF 804
            LF
Sbjct: 781 GLF 783