Pairwise Alignments

Query, 264 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 256 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Xanthobacter sp. DMC5

 Score =  121 bits (303), Expect = 2e-32
 Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 1/236 (0%)

Query: 27  LALLAAWEGAVRAGAVSALYLPAPSAIFESFVPMLMRGQLLHHTGVTLAEFAVGYAAAVV 86
           LALL  WE A R G V A + P PS+I  +F  ++  G+L  +   +L    +G     V
Sbjct: 19  LALLGLWEAAARMGLVDARFFPPPSSIVHTFGALVASGELWTNLLASLRRLFLGMLLGGV 78

Query: 87  AGIGFGVLLVLTPAAERFAQPFVAALMSVPKVAIVPLLALWLGIGFSHKVAIVFLFSVFQ 146
             +  G+ + ++        P ++A   +PK AI+PL+ L  G+G   KV +V L + + 
Sbjct: 79  PALFLGLAMGISKPLRAAIDPLISATYPIPKSAILPLVLLIFGLGEMSKVVMVALGAFYP 138

Query: 147 ILYSTIAGIKQTRREHLKVARAFRASTLQTVWKVILPSAVPTIFAALRVSASVGLVGALF 206
           IL +T+ G+    + +L V   +RAS  Q    + LP A+P+I A ++++  +GL+    
Sbjct: 139 ILINTVMGVANIDKIYLDVGHNYRASRWQVFRTIALPGALPSIMAGVKLAMGMGLILIAI 198

Query: 207 AEMLSSKEGLGNLITRSTASLDTAETFALIVLVTVLAVAMIAALDLLERLLFLRWR 262
           +EM+++ +G+G +I  +   L     +  ++++ +L       LD +ER+L + W+
Sbjct: 199 SEMVAASDGIGYMIWNAWQVLTVDTMYVGLLVIALLGFVFSVILDEIERML-IPWK 253