Pairwise Alignments

Query, 280 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 300 a.a., ABC transporter, membrane spanning protein (dipeptide) from Agrobacterium fabrum C58

 Score =  219 bits (559), Expect = 4e-62
 Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 1/262 (0%)

Query: 12  AATGLLLLALFLAAALLGPALAPFDPLATDVLNRLQPPGAAHWFGTDALGRDLLSRVLVA 71
           A  GL ++ LF+A +LL PA+AP+DP   ++ NRL  P A HWFGTD LGRD+LSR+L  
Sbjct: 39  AVIGLTIIVLFIALSLLAPAIAPYDPATQNLGNRLAFPNAEHWFGTDELGRDILSRILYG 98

Query: 72  TRLDLGMAAGAVVLSLLLGSALGAWCGFVGGRIDRWIGRLVDVLMAFPLFVVAMALVAAW 131
            R+ LGM    VVL   +G A+G   G+ GG +D  + R+ DV +AFP  ++A+A VAA 
Sbjct: 99  GRVTLGMVIAVVVLVAPIGLAIGCIAGYFGGIVDTVLMRVTDVFLAFPRLILALAFVAAL 158

Query: 132 GNSVANIVYATALINLPFYIRLARSEVGVRRNAGYVLAARLGGATAPRLLFGVLLPHVLP 191
              V + + A AL   P Y RLAR+E    R + +V A RL GA+A R++   + P  +P
Sbjct: 159 KPGVESAILAIALTAWPPYARLARAETMTVRGSDFVAAYRLTGASAWRIIARHIAPLCVP 218

Query: 192 MLAVQGSINLGWALLNGAGLSFIGLGVRPPTAEWGVLVSEGAPYIITGQWWLAFFPGLAL 251
            L V+ ++++   ++  A L F+G+G +PP+ EWG +++    +I   QWW+A  PG+A+
Sbjct: 219 SLIVRITLDMSSIIITAASLGFLGMGAQPPSPEWGAMIATAKRFIFE-QWWVATIPGIAI 277

Query: 252 FAAVGCFTLLGDALRDLLDPRG 273
           F     F  LGD LRD+LDP+G
Sbjct: 278 FLVSLAFNFLGDGLRDVLDPKG 299