Pairwise Alignments

Query, 532 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 526 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  136 bits (343), Expect = 2e-36
 Identities = 140/537 (26%), Positives = 230/537 (42%), Gaps = 68/537 (12%)

Query: 18  LGLPLSAL---AQSRKETVRVLAEGAPNSQDPH--GEGVSRESLGLFTNVYDRLINFDR- 71
           LGL L A+   A  + +T+   +EG+P   +P     G + ++  +   +Y+RL+ F   
Sbjct: 4   LGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSV--PIYNRLVEFKTG 61

Query: 72  -VQVSPGVFKYDYGRFRGELAESFEQSADGRTLTFRLRRDATFHDGKP------VTASDV 124
             +V PG            LAE ++ S DG+T TF LR+   +   K       + A DV
Sbjct: 62  TTEVIPG------------LAEKWDISEDGKTYTFHLRKGVKWQSSKDFKPTRELNADDV 109

Query: 125 KWSLDRAVSLPASKRQLATGSLEN---------PSQFSVVDAHTFRITLPRADRYTLPNL 175
            +S DR  +      +++ GS E           S+   VD HT +  L R +   L +L
Sbjct: 110 VFSFDRQKNEQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDDHTVQFVLTRPEAPFLADL 169

Query: 176 ALFFASVLNAELARAHATAADPWAAEWVKANSAGGGAYRVENLTPGQQVIYARFHNWKSG 235
           A+ FAS+L+ E A     A  P   E V  N  G G +++       +++Y  F  +  G
Sbjct: 170 AMDFASILSKEYADNMLKAGTP---EKVDLNPVGTGPFQLVQYQKDSRILYKAFDGYW-G 225

Query: 236 ALPQVRRAVFQVVPSASNRVAALLKGDADVALQLPPKDLDALTDTTRAKVVSVPVTTSFR 295
             PQ+ R VF + P AS R A L K +  V     P D+  + +     ++      +  
Sbjct: 226 TKPQIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKEDKNINLME-QAGLNVG 284

Query: 296 FVAFNTQAKPFDDVRVRQAIAYALPYTSLLRGANLGRGEPLYGARSAKPTGSRFP---QP 352
           ++++N Q KP DDV+VRQA+ YA+   ++++    G G  +       PT   +    + 
Sbjct: 285 YLSYNVQKKPLDDVKVRQALTYAVNKEAIIKAVYQGAG--VAAKNLIPPTMWGYNDDIKD 342

Query: 353 YPYETQLLRARELLAQAGLAKGFKTSF-------SYNVGDATLAEPAALLIQEALGKIGI 405
           Y Y+ +  +A+ LL +AGL KGF            YN     +AE    +IQ    KIG+
Sbjct: 343 YGYDPE--KAKALLKEAGLEKGFTIDLWAMPVQRPYNPNARRMAE----MIQADWAKIGV 396

Query: 406 ELSIEKVPGAQWGTLQTEKKLPFFIDSSSAWF---NDPDYFFRIFFQGDWRW---NFGSF 459
           +    K+   +WG      K          W     DPD FF   F  D      N+  +
Sbjct: 397 Q---AKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCDAAQQGSNYSKW 453

Query: 460 KNDELAKLVDQARWETDRAKYDRAIQRAIEIAFEQVPLVPLWLPSFEAALQPDLQGF 516
                  L+  AR   D  K     ++A  +  +Q P + +   +    ++ +++G+
Sbjct: 454 CYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIIAHSTVYEPVRKEVKGY 510