Pairwise Alignments

Query, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

Subject, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  521 bits (1341), Expect = e-152
 Identities = 270/464 (58%), Positives = 337/464 (72%), Gaps = 4/464 (0%)

Query: 11  TPADNGFAALALSPQMLANLTQLGYTQMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFA 70
           T     F  L LS  MLANL  LGY +MT IQA +LP  L G DLIAQAKTGSGKTAAF 
Sbjct: 2   TTIATAFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFG 61

Query: 71  LALLANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVAS 130
           + LL  +N R F  QA+V+CPTRELADQV  EIRRLARAE+NIKV+TLCGGV+L  Q+AS
Sbjct: 62  IGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIAS 121

Query: 131 LEHGAHIVVGTPGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKER 190
           LEHGAH++VGTPGRI  HL + +L L  LNTL+LDEADRMLDMGF+D I  +  + P  R
Sbjct: 122 LEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRR 181

Query: 191 QTLLFSATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQIKDSERLHAVSLLLDH 250
           QTLLFSATYP  I +LA +FM+ P+Q+  +A H   +I QR+Y+I   ER+ AV+ +L H
Sbjct: 182 QTLLFSATYPVSIKQLASKFMRAPQQVKAEAFHSDDQIEQRFYEISPEERMDAVTKVLAH 241

Query: 251 FRPVSTLAFCNTKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVAT 310
           FRP S +AFC TKQQ ++ VD L ++G SA+ L G+LEQR+RDQVL  FANRS SVLVAT
Sbjct: 242 FRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVAT 301

Query: 311 DVAARGLDISQLEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFVG 370
           DVAARGLDI  L+ VINV++  DSEIHIHRVGRTGR G+     G+A++L + +E     
Sbjct: 302 DVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGE----TGIAISLVAPSEAHRAQ 357

Query: 371 KIEQLQGRESEWHELSELTPGKGSPLKPPMATLQIVGGRKEKIRAGDVLGALTGDCGYAK 430
            IEQLQ     W +L  L P  G PL P M+TL I  GRK+K+R GD+LGALTG+ G   
Sbjct: 358 AIEQLQKSPLNWDQLDNLKPQSGGPLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPG 417

Query: 431 DQVGKINVNEFSTYVAVDRAIAAEAARKLSSGRVKGKSVKVRLL 474
            QVGKI + +F  +VAV+R IA +A ++L+ G++KG+S++VR+L
Sbjct: 418 AQVGKIAIFDFQAFVAVERGIAKQALQRLNDGKIKGRSLRVRIL 461