Pairwise Alignments

Query, 326 a.a., BUG/TctC family periplasmic protein from Variovorax sp. SCN45

Subject, 321 a.a., ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate) from Variovorax sp. SCN45

 Score =  249 bits (636), Expect = 6e-71
 Identities = 134/325 (41%), Positives = 190/325 (58%), Gaps = 6/325 (1%)

Query: 2   NRRHALGYFSAALAAATVPGLAQAQGDKPITIVVPYAAAGTADMLGRMLAKEMGPLLSRQ 61
           N R  L   +A  A A + G A A  DKPI +VVPYAA G AD   R++A+++   L +Q
Sbjct: 3   NTRRVLKTIAAIAACAPLLGWA-AWPDKPIRMVVPYAAGGGADNTARIVAQQLSAALGQQ 61

Query: 62  IIVDNKPGAGSSIGASFVARAPADGNTLLIATSTTLAINPTLYMKLTYDPVKDFAPIGLI 121
           I++DN+PGAG  IGA  VA+A ADG T+L   S   ++NP+L  KL +D  KDF P+ L+
Sbjct: 62  IVIDNRPGAGGVIGADNVAKAAADGYTVLYDASA-FSVNPSL-RKLPFDAAKDFIPVSLV 119

Query: 122 GAVPLLAVVHADVPAKNIAELIALSKANPGSLSYGSAGNGSPQHLGVELFKAQTGANLTH 181
              P + VV  + P K +AE +  ++ NPG LS+ SAG G+  HL  E    Q   NL H
Sbjct: 120 ATAPQILVVPENAPYKTVAEFLDFARKNPGKLSFASAGGGTGSHLAGEALNEQAKVNLMH 179

Query: 182 VPYRGSSPALADLLRGQIQVMFTDIPPALQHVRSGRLRALAVTSAKRQPALVNVPTVAES 241
           VPY+G +PAL DL+ GQ+   F ++   L +V+SG+LRALAV+S KR PAL + PT+ ES
Sbjct: 180 VPYKGGAPALTDLMGGQVSAYFGNVASTLSYVKSGKLRALAVSSTKRVPALPDTPTLGES 239

Query: 242 GAAGTQGFDAVAWQSVVAPADTPPELLNRYSEALAKVMAQPELRAQLESEGFEPGSATPS 301
              G  G++ V W  V  P  TP +++ +  +A+   +  P +  +L   G EP   TP 
Sbjct: 240 ---GLPGYNVVEWNGVFLPKGTPADIVQKLGKAVQAAINDPTVHQKLLQLGLEPAGTTPE 296

Query: 302 QLKAYIRSEIARWGHVIRAAGATVD 326
               +++ EI R   ++RA    VD
Sbjct: 297 AFARFVQDEIGRVSALVRARNIRVD 321