Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 325 a.a., xylitol ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  163 bits (412), Expect = 6e-45
 Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 11/307 (3%)

Query: 11  LVLLVVLVCT-MVFMSPLYQTAPGLMSFLQRAAPLVILTCGASFVLIAGGFDLSSGALIT 69
           L L+ +L+C  M F S  + T    M  L++ +   IL  G ++V++  G DLS G+++ 
Sbjct: 27  LPLVFILLCVVMAFSSEYFMTWRNWMDILRQTSINGILAVGMTYVILTKGIDLSVGSILA 86

Query: 70  LVVIGCALITNGDADMTWTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLGGLLSIKGI 129
              +  A++      +   AV+A    G  +G++NG +V  L +P  +ATLG L   +G+
Sbjct: 87  FAGLCSAMVATQGYGLL-AAVSAGMFAGAMLGVVNGFMVANLSIPPFVATLGMLSIARGM 145

Query: 130 AMVWSGGAPSGYLPQNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALCFWLMHR-TNFGR 188
             + + G+P   LP     LG G +      G + + +I+ AV VAL FW++ R T +GR
Sbjct: 146 TFILNDGSPITDLPDAYLALGIGKI------GPIGVPIIIFAV-VALIFWMVLRYTTYGR 198

Query: 189 LVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGGFSGVSV-DVGTGYDLQA 247
            V  +G N  +A  +G  VR+V  + +V+S L A  AG++L   +  ++   G  Y+L A
Sbjct: 199 YVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLSARTTSALPQAGVSYELDA 258

Query: 248 IAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQGLILIGAAALT 307
           IAA VIGG  L GG GSI G   GAL +  +   LNLLG S   +   +GLI++ A  + 
Sbjct: 259 IAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFAVLID 318

Query: 308 AWRHQRR 314
            WR ++R
Sbjct: 319 VWRKKKR 325