Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 340 a.a., Inositol transport system permease protein (from data) from Pseudomonas simiae WCS417

 Score =  127 bits (320), Expect = 3e-34
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 23/293 (7%)

Query: 34  LMSFLQRAAPLVILTCGASFVLIAGGFDLSSGALITL-VVIGCALITNGDADMT------ 86
           L+  + + + + +L  G + V+I  G DLSSG+++ L  +I  +L    D          
Sbjct: 56  LVLMILQVSIIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLT 115

Query: 87  ----WTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLGGLLSIKGIAMVWSGGAPSGYL 142
               W  VA    +GL  G +NG ++    +P  IATLG ++S +G+A  ++ G P   L
Sbjct: 116 DLPVWIPVAMGLGVGLLAGAINGSIIAVTGIPPFIATLGMMVSARGLARYYTEGQPVSML 175

Query: 143 PQNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALCFWLMHRTNFGRLVLMIGDNPVAAEL 202
             +   +G G +            VI+  V   +    +  T +G+    IG N  AA  
Sbjct: 176 SDSYTAIGHGAM-----------PVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAART 224

Query: 203 AGAPVRRVRVAAFVLSSLSAVTAGILLGGFSGVS-VDVGTGYDLQAIAAAVIGGVVLLGG 261
           +G  V+R  +  + ++ L A  AG++    +      +G  Y+L AIAAAVIGG  L GG
Sbjct: 225 SGINVKRHLIIVYSIAGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLAGG 284

Query: 262 RGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQGLILIGAAALTAWRHQRR 314
            G I G  IGAL L  + +    +G    ++  ++GLI++ A  +  +R++R+
Sbjct: 285 VGRITGTVIGALILGVMASGFTFVGVDAYIQDIIKGLIIVVAVVIDQYRNKRK 337