Pairwise Alignments

Query, 990 a.a., TnpA transposase from Variovorax sp. SCN45

Subject, 1004 a.a., putative transposase from Pseudomonas putida KT2440

 Score =  246 bits (629), Expect = 4e-69
 Identities = 225/983 (22%), Positives = 437/983 (44%), Gaps = 37/983 (3%)

Query: 7   LSVAERDSLLALPAT--QDELIRHYTLSETDLSIIRQHRKA-ANRLGFAVQLCYMRHPGV 63
           ++  ER +   LP+     EL R Y+LS++++  +    K+ A  +G A+QL   +    
Sbjct: 4   MASVERTAYPILPSQLPAKELHRSYSLSDSEIEWVNNTAKSPALSIGLAIQLKVFQQLHY 63

Query: 64  TLEIDEEPFAPLLRMVAAQLKVTPECWAEYGQRAETRREHLLELQSNFGFQTFTTRHYRA 123
            +  +E P   L+  V   L+        Y       R      Q       +++     
Sbjct: 64  FVPFEELP-QELISHVRQCLRYGARIAPRYSNPRTLYRHQAAVRQYLQVTPFYSSDGLAV 122

Query: 124 SIQSLEELALQTDKGIVLASELADGLRRKSILLPSPNVIERICAEAITRANRRIYAALTD 183
           + Q   + A+  ++ + L + + D L ++   LP+ + +  +   A+  A    +  +  
Sbjct: 123 TEQIARDCAVVLEQRVDLINAMLDELIQRGYELPAYSTLNNLAETALASAQEVTFNLVVT 182

Query: 184 TLSAVHRQRLDELLKRKEGSKVTWLAWLRQSPIKPNSRHM---LEHIERLKAWQALDLPA 240
                   +L ELL    G + +    L+Q+P KP+ +H+   ++H+  L+++  L+   
Sbjct: 183 RAPIEVIYKLKELLDTDFGRRQSDFNALKQAPKKPSRKHLEVLIDHLAWLESFGDLE--- 239

Query: 241 GIERQVHQNRLLKIAREGGQMTPADLARFEVQRRYATLVALTIEGMATVTDEIIDLHDRI 300
            I   +   ++   A +      ++L    + +R+  ++AL         D + ++  R 
Sbjct: 240 AIFEGIVDAKIRHFAAQAAAADVSELKDCSLPKRHTLMLALIYRMRVRTRDHLAEMFIRR 299

Query: 301 IGKLFNKAKNKHQQQFQASGKAINDKVRLYGRVGQALLEAKQSGSDPFAAIESVLSWDAF 360
           I  +  +AK + +Q      + +         V Q L++ +    +  + I   LS D  
Sbjct: 300 ISTIHKRAKEELEQIQARQRQKLEQLAATLDGVVQILVQ-EPDDQEAGSLIREYLSPDGN 358

Query: 361 TASVGEA-QKLAQPAQFDFLHRIGENYATLRRYAPQFLEVLKLRAAPAAKGVLDAIDVLR 419
              + E   ++      ++L  I +++ + R    +   +L+L      + +  A+ +++
Sbjct: 359 LDRLRETCAEVQATGGNNYLPLIWKHFRSHRSLLFRLSHLLQLEPTTQDRSLTQALQLIQ 418

Query: 420 GMNADNARKVPVGAPTAFVKPRWARLVL--TDEG--IDRRYYELCALSELKNALRSGDVW 475
                +   +      +F   RW ++V   + EG   +RRY E+C  S L + LRSGD+ 
Sbjct: 419 DSENLHREWIDEHVDLSFASERWVKVVRRPSSEGPPTNRRYLEVCVFSYLASELRSGDMC 478

Query: 476 VQGSRQFKDFEDYLVPAGKFAEMKLASQLPLAVATDCDQY-------LHERLSLLEQQLA 528
           VQGS  F D+   L+P  +  +   A    + +     ++       L E    L+++  
Sbjct: 479 VQGSVSFADYRKQLLPWEECLQRLPAYCEKMGLPGTAKEFVASLKTQLEETAQQLDEKFP 538

Query: 529 TVNRLAAANELPDAIITITSGLKVTPLDAAVPDAAQALIDQAAALLPHVKITELLMEVDE 588
           +     + NE  + ++      +V   D  +P +A +L       +P   + +++  ++ 
Sbjct: 539 SCRGDVSINEAGEPVLR-----RVAARD--IPPSAISLQTALMQRMPARHVLDIMANIEH 591

Query: 589 WTGFTRHFTHLKTGDTA--QDKTLLLTTLLADGINLGLAKMAESCPGT-TYARLSWLQAW 645
           W  FTRHF  +   +    +     L T+ A G NLG ++ A    G  T   LS+    
Sbjct: 592 WIQFTRHFGPMSGNEPKLKEPAERYLMTIFAMGCNLGPSQAARHLTGNVTPHMLSYTNRR 651

Query: 646 HIRDETYSSALGELVNAQLRQPFAGNWGDGTTSSSDGQRFKAGGRAESTGHINPKYGSDP 705
           H+  E    A  ELV   L+      WGDG   ++DG +F         G+ + +Y    
Sbjct: 652 HLSLEKLDKANRELVELYLQLDLPKLWGDGKAVAADGTQFDFYDDNLLAGY-HFRYRK-M 709

Query: 706 GRMFYTHISDQYAPFSAKVVNVGVRDSTYVLDGLLYHESDLAVEEHYTDTAGFTDHVFGL 765
           G + Y H+++ Y       +  G+ ++ YV++GLL  +  +  +  Y+DT G +  VF  
Sbjct: 710 GAVAYRHVANNYIAVFQHFIPPGIWEAIYVIEGLLKADLSVEADTVYSDTQGQSATVFAF 769

Query: 766 MHLLGFRFAPRIRDLGDTKLFIPKGDASYDALAPMISSDRLNIRHIRAHWEDILRLATSI 825
            HLLG    PRIR+  D  +  P   ASY  +  + + D  +   I  HW+D++++A SI
Sbjct: 770 THLLGINLMPRIRNWRDLVMCRPDRGASYKHINRLFT-DTADWNLIETHWQDLMQVALSI 828

Query: 826 KQGTVTASLMLRKLGSYPRQNGLAIALRELGRIERTLFILDWLQSVELRRRVQVGLNKGE 885
           + G +++ ++LRKLGSY R+N L  A + LG + RT+F+L+W+ S ELR+ V    NK E
Sbjct: 829 QAGKISSPMLLRKLGSYSRRNKLYHAAQALGSVIRTIFLLNWIGSRELRQEVTANTNKIE 888

Query: 886 ARNALARAVFFYRLGEIRDRSFEQQRYRASGLNLITAAIVLWNTVYLERAINALRGHATP 945
           + N  ++ + F     I +   ++Q+ R    +++ ++++L NTV + R ++ L      
Sbjct: 889 SYNGFSKWLSFGG-DVIAENDPDEQQKRLRYNDMVASSVILQNTVDMMRILHKLAREGWQ 947

Query: 946 VDDALLQYLSPLGWEHINLTGDY 968
             D  + +LSP    ++   G++
Sbjct: 948 FTDEDVSFLSPYLTSNVKRFGEF 970