Pairwise Alignments

Query, 409 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 378 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  108 bits (270), Expect = 3e-28
 Identities = 86/330 (26%), Positives = 143/330 (43%), Gaps = 16/330 (4%)

Query: 8   LALTSALAFSMGALAADPIKIGVDGPFTGGSSSMGVSMRDGVRLAAEEINKSGGVLGRQI 67
           LAL  A A  +       +KIGV GP TG +++ G     G + AA+ INK+GG+ G +I
Sbjct: 11  LALAVAAALGVSTFVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADVINKAGGINGEKI 70

Query: 68  QLIERDDEAKNERGVQIAQEFVNKEKVVAAVGYINTGVALASQRFFQDAKIPVLNNVATG 127
            L+  DD  + ++ V +A    +++KV+  VG+  +   + +   + +A I  +   +T 
Sbjct: 71  VLVAGDDACEPKQAVAVANRLADQDKVIGVVGHFCSSNTIPASEVYDEAGIIAITPGSTN 130

Query: 128 SVITHQFDKDPENYVFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGREDLE 187
             +T +        +FR    D  Q  +  +  +     KKVA++ D   YG+   +   
Sbjct: 131 PQVTER----GLGAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVINDKDTYGKGLADATA 186

Query: 188 RALKNKGITPVAVEKFNIKDVDMTAQLLKSKEAGAEAVLTYGIGPELAQIANGMTKLGWK 247
             L  +G+ PV  E     + D +A + K +  GA+ V   G+ PE   +   + + G K
Sbjct: 187 AQLTKRGVKPVLEEGLTRGEKDFSALVTKIRSTGADVVYFGGLHPEAGPLVRQIREAGLK 246

Query: 248 -VPIIGSWTLAMANFIDNAGPGG--DGARMPQTFIQEP-TNPKRKAFIDAFVGKFKPKNN 303
            V  +    +     +  AG     DG  M  TF  +P   P  KA ++ F      + N
Sbjct: 247 DVKFMSDDGVVTDELVATAGGAQYVDGVYM--TFGADPRLLPDSKAVVEEF------RKN 298

Query: 304 RMDSPVSAAQGYDSIYLLAAAIKQAGSTDG 333
             +        Y S+  LAA    A S  G
Sbjct: 299 GTEPEGYTLYAYASVQALAAGFNGAKSNKG 328