Pairwise Alignments

Query, 409 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score =  107 bits (266), Expect = 8e-28
 Identities = 91/337 (27%), Positives = 145/337 (43%), Gaps = 15/337 (4%)

Query: 6   KLLALTSALAFSMGALAADPIKIGVDGPFTGGSSSMGVSMRDGVRLAAEEINKSGGVLGR 65
           KL A       +  + AAD IKIG+ GP TG  +  G     G + A  +IN  GGV G+
Sbjct: 10  KLFAAMVLAGVAGHSFAADTIKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAKGGVDGK 69

Query: 66  QIQLIERDDEAKNERGVQIAQEFVNKEKVVAAVGYINTGVALASQRFFQDAKIPVLNNVA 125
            ++  E DD    ++ V +A + VN + V   VG++ +     +   ++D  + ++   A
Sbjct: 70  MLEAKEYDDACDPKQAVAVANKVVN-DGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAA 128

Query: 126 TGSVITHQFDKDPENYVFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGRED 185
           T   IT +  K     +FR    DS Q P            K VA+L D   YG+     
Sbjct: 129 TSPEITARGYK----LIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATA 184

Query: 186 LERALKNKGITPVAVEKFNIKDVDMTAQLLKSKEAGAEAVLTYGIGPELAQIANGMTKLG 245
           +++ L+ KG      E  N  D D ++ + K K+A  + V   G  PEL  I     + G
Sbjct: 185 VKQTLEKKGTKVAVFEGLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLILRQAKEKG 244

Query: 246 WKVPIIGSWTLAMANFIDNAGPGGDG--ARMPQTFIQEPTNPKRKAFIDAFVGKFKPKNN 303
                +G   +   +    A    +G    +P++F    T+P  KA ++ F      KN 
Sbjct: 245 LNAKFMGPEGVGNDSISQIAQGASEGLLVTLPKSF---DTDPANKAIVEEFA-----KNK 296

Query: 304 RMDSPVSAAQGYDSIYLLAAAIKQAGSTDGPKIKAAL 340
           +  +       Y +I ++A  IK A S D  K+  A+
Sbjct: 297 QDPTGPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAI 333



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 307 SPVSAAQGYDSIYLLAAAIKQAGSTDG--------PKIKAALEDLQAPVEGVVTTYNKPF 358
           SP   A+GY  I+         G   G        PKI A L D Q   EG+ T   +  
Sbjct: 130 SPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATAVKQTL 189

Query: 359 TK 360
            K
Sbjct: 190 EK 191