Pairwise Alignments

Query, 409 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  113 bits (283), Expect = 8e-30
 Identities = 88/330 (26%), Positives = 149/330 (45%), Gaps = 16/330 (4%)

Query: 8   LALTSALAFSMGALAADPIKIGVDGPFTGGSSSMGVSMRDGVRLAAEEINKSGGVLGRQI 67
           LAL  A A  + +     +KIGV GP TG +++ G     G + AA++IN +GGV G +I
Sbjct: 11  LALAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKI 70

Query: 68  QLIERDDEAKNERGVQIAQEFVNKEKVVAAVGYINTGVALASQRFFQDAKIPVLNNVATG 127
            L++ DD  + ++ V +A   V+++KV+  VG+  +   + +   + +A +  +   +T 
Sbjct: 71  VLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAITPGSTN 130

Query: 128 SVITHQFDKDPENYVFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGREDLE 187
             +T +      + +FR    D  Q  +  +  +     KKVA+L D   YGQ   +  +
Sbjct: 131 PQVTER----GLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATK 186

Query: 188 RALKNKGITPVAVEKFNIKDVDMTAQLLKSKEAGAEAVLTYGIGPELAQIANGMTKLGWK 247
             L+ +G+ PV  E     + D +A + K +  GA+ V   G+ PE   +   + + G K
Sbjct: 187 AQLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLK 246

Query: 248 -VPIIGSWTLAMANFIDNAGPGG--DGARMPQTFIQEP-TNPKRKAFIDAFVGKFKPKNN 303
            V  +    +     +  AG     DG  M  TF  +P   P  KA ++ F      +  
Sbjct: 247 DVKFMSDDGIVTDELVSTAGGAQYVDGVYM--TFGADPRLLPDSKAVVEEF------RKA 298

Query: 304 RMDSPVSAAQGYDSIYLLAAAIKQAGSTDG 333
             +        Y S+  LAAA   A S  G
Sbjct: 299 GTEPEGYTLYAYASLQALAAAFNGAKSNKG 328